Strain identifier

BacDive ID: 23818

Type strain: Yes

Species: Chitinimonas viridis

Strain history: <- K. Joh, Bioscience and Biotechnology, Hankuk Univ. of Foreign Studies, Yongin, Republic of Korea; HMD2169 <- Y. C. Joung et al., Hankuk University

NCBI tax ID(s): 664880 (species)

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General

@ref: 20499

BacDive-ID: 23818

DSM-Number: 29130

keywords: 16S sequence, Bacteria, mesophilic

description: Chitinimonas viridis DSM 29130 is a mesophilic bacterium that was isolated from mesotrophic artificial lake.

NCBI tax id

  • NCBI tax id: 664880
  • Matching level: species

strain history

  • @ref: 20499
  • history: <- K. Joh, Bioscience and Biotechnology, Hankuk Univ. of Foreign Studies, Yongin, Republic of Korea; HMD2169 <- Y. C. Joung et al., Hankuk University

doi: 10.13145/bacdive23818.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Chitinimonas
  • species: Chitinimonas viridis
  • full scientific name: Chitinimonas viridis Joung et al. 2014

@ref: 20499

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Chitinimonas

species: Chitinimonas viridis

full scientific name: Chitinimonas viridis Joung et al. 2014

type strain: yes

Morphology

multimedia

  • @ref: 20499
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29130.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 20499
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 20499
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
20499-----++-------------+

Isolation, sampling and environmental information

isolation

  • @ref: 20499
  • sample type: mesotrophic artificial lake
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment
#Environmental#Aquatic#Lake (large)

taxonmaps

  • @ref: 69479
  • File name: preview.99_69672.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16429;96_21397;97_37731;98_48944;99_69672&stattab=map
  • Last taxonomy: Chitinimonas
  • 16S sequence: GQ354569
  • Sequence Identity:
  • Total samples: 5232
  • soil counts: 1004
  • aquatic counts: 3002
  • animal counts: 459
  • plant counts: 767

Safety information

risk assessment

  • @ref: 20499
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20499
  • description: Chitinimonas viridis strain HMD2169 16S ribosomal RNA gene, partial sequence
  • accession: GQ354569
  • length: 1389
  • database: ena
  • NCBI tax ID: 664880

External links

@ref: 20499

culture collection no.: DSM 29130, CECT 7703, KCTC 22839, HMD 2169

straininfo link

  • @ref: 87848
  • straininfo: 393377

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24408519Chitinimonas viridis sp. nov., isolated from a mesotrophic artificial lake.Joung Y, Lee BI, Kang H, Kim H, Joh KInt J Syst Evol Microbiol10.1099/ijs.0.055442-02014Bacterial Typing Techniques, Base Composition, Burkholderiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny28434214Chitinimonas naiadis sp. nov., Isolated from a Freshwater River.Padakandla SR, Chae JCJ Microbiol Biotechnol10.4014/jmb.1703.030752017Bacterial Typing Techniques, Base Composition, Burkholderiaceae/*classification/*genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Genome, Bacterial, Phosphatidylethanolamines/analysis, Phylogeny, RNA, Ribosomal, 16S, Republic of Korea, Rivers/*microbiologyGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20499Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29130Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29130)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87848Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID393377.1