Strain identifier

BacDive ID: 23817

Type strain: Yes

Species: Caballeronia zhejiangensis

Strain Designation: OP-1

Strain history: <- KCTC <- P. Lu et al., Key Lab. of Microbiological Engineering of Agricultural Environment, Nanjing Agricultural University; OP-1

NCBI tax ID(s): 871203 (species)

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General

@ref: 20490

BacDive-ID: 23817

DSM-Number: 28073

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped, human pathogen

description: Caballeronia zhejiangensis OP-1 is a mesophilic, Gram-negative, rod-shaped human pathogen that was isolated from sludge from waste-water treatment plant of a pesticide manufactoring plant.

NCBI tax id

  • NCBI tax id: 871203
  • Matching level: species

strain history

  • @ref: 20490
  • history: <- KCTC <- P. Lu et al., Key Lab. of Microbiological Engineering of Agricultural Environment, Nanjing Agricultural University; OP-1

doi: 10.13145/bacdive23817.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Caballeronia
  • species: Caballeronia zhejiangensis
  • full scientific name: Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016

  • synonyms

    @refsynonym
    20215Burkholderia zhejiangensis
    20215Paraburkholderia zhejiangensis

@ref: 20490

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Caballeronia

species: Caballeronia zhejiangensis

full scientific name: Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016

strain designation: OP-1

type strain: yes

Morphology

cell morphology

  • @ref: 30412
  • gram stain: negative
  • cell length: 1.3 µm
  • cell width: 0.35 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 20490
  • incubation period: 8-14 days

multimedia

  • @ref: 20490
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28073.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20490MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462)yeshttps://mediadive.dsmz.de/medium/462Name: MINERAL MEDIUM (BRUNNER) WITH VITAMINS (DSMZ Medium 462) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l Peptone 5.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Meat extract 3.0 g/l Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxamine 0.000125 g/l ZnSO4 x 7 H2O 0.0001 g/l Nicotinic acid 5e-05 g/l Vitamin B12 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l p-Aminobenzoate 2.5e-05 g/l Thiamine-HCl x 2 H2O 2.5e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Calcium pantothenate 1.25e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Biotin 5e-06 g/l Distilled water
20490NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20490positivegrowth28mesophilic
30412positivegrowth04-40
30412positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
30412positivegrowth04-10alkaliphile
30412positiveoptimum7

Physiology and metabolism

spore formation

  • @ref: 30412
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3041222599arabinose+carbon source
3041227689decanoate+carbon source
3041216947citrate+carbon source
3041224265gluconate+carbon source
3041217234glucose+carbon source
3041225115malate+carbon source
3041237684mannose+carbon source
30412506227N-acetylglucosamine+carbon source
3041218401phenylacetate+carbon source
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
30412urease+3.5.1.5
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
20490+-------+++++-++-+-++

Isolation, sampling and environmental information

isolation

  • @ref: 20490
  • sample type: sludge from waste-water treatment plant of a pesticide manufactoring plant
  • geographic location: Zhejinag
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Plant (Factory)
#Engineered#Waste#Water treatment plant
#Environmental#Terrestrial#Mud (Sludge)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3955.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_18;97_1155;98_1378;99_3955&stattab=map
  • Last taxonomy: Burkholderia
  • 16S sequence: HM802212
  • Sequence Identity:
  • Total samples: 11435
  • soil counts: 6263
  • aquatic counts: 545
  • animal counts: 1567
  • plant counts: 3060

Safety information

risk assessment

  • @ref: 20490
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20490
  • description: Burkholderia zhejiangensis strain OP-1 16S ribosomal RNA gene, partial sequence
  • accession: HM802212
  • length: 1490
  • database: ena
  • NCBI tax ID: 871203

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Caballeronia zhejiangensis OP-1GCA_000698575contigncbi871203
66792Caballeronia zhejiangensis OP-12772190654draftimg871203

GC content

  • @ref: 30412
  • GC-content: 59.4

External links

@ref: 20490

culture collection no.: DSM 28073, CCTCC AB 2010354, KCTC 23300

straininfo link

  • @ref: 87847
  • straininfo: 380308

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21828021Burkholderia zhejiangensis sp. nov., a methyl-parathion-degrading bacterium isolated from a wastewater-treatment system.Lu P, Zheng LQ, Sun JJ, Liu HM, Li SP, Hong Q, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.035428-02011Base Composition, Biodegradation, Environmental, Burkholderia/*classification/genetics/*isolation & purification/metabolism, China, DNA, Bacterial/genetics, Fatty Acids, Insecticides/*metabolism, Methyl Parathion/*metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology, Water PurificationMetabolism
Phylogeny23087167Burkholderia grimmiae sp. nov., isolated from a xerophilous moss (Grimmia montana).Tian Y, Kong BH, Liu SL, Li CL, Yu R, Liu L, Li YHInt J Syst Evol Microbiol10.1099/ijs.0.045492-02012Bacterial Typing Techniques, Base Composition, Bryophyta/*microbiology, Burkholderia/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny24981326Burkholderia jiangsuensis sp. nov., a methyl parathion degrading bacterium, isolated from methyl parathion contaminated soil.Liu XY, Li CX, Luo XJ, Lai QL, Xu JHInt J Syst Evol Microbiol10.1099/ijs.0.064444-02014Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Insecticides/metabolism, Methyl Parathion/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/metabolism, Ubiquinone/chemistryMetabolism
Phylogeny25563916Burkholderia megalochromosomata sp. nov., isolated from grassland soil.Baek I, Seo B, Lee I, Lee K, Park SC, Yi H, Chun JInt J Syst Evol Microbiol10.1099/ijs.0.0000462015Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Grassland, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20490Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28073Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28073)
30412Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172674928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87847Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID380308.1