Strain identifier
BacDive ID: 23810
Type strain:
Species: Paenochrobactrum pullorum
Strain Designation: 280
Strain history: CIP <- 2013, P. Kämpfer, , Giessen Univ., Giessen, Germany: strain 280
NCBI tax ID(s): 1324351 (species)
General
@ref: 21211
BacDive-ID: 23810
DSM-Number: 28192
keywords: 16S sequence, Bacteria, mesophilic, Gram-positive, rod-shaped
description: Paenochrobactrum pullorum 280 is a mesophilic, Gram-positive, rod-shaped bacterium that was isolated from faeces of a chicken.
NCBI tax id
- NCBI tax id: 1324351
- Matching level: species
strain history
@ref | history |
---|---|
21211 | <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; 280 <- M. Poppel and G. Wilharm |
122045 | CIP <- 2013, P. Kämpfer, , Giessen Univ., Giessen, Germany: strain 280 |
doi: 10.13145/bacdive23810.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Brucellaceae
- genus: Paenochrobactrum
- species: Paenochrobactrum pullorum
- full scientific name: Paenochrobactrum pullorum Kämpfer et al. 2014
@ref: 21211
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Brucellaceae
genus: Paenochrobactrum
species: Paenochrobactrum pullorum
full scientific name: Paenochrobactrum pullorum Kämpfer et al. 2014
strain designation: 280
type strain: yes
Morphology
cell morphology
- @ref: 122045
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 21211
- incubation period: 1-2 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
21211 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
122045 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 21211
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | + | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
21211 | catalase | + | 1.11.1.6 |
21211 | cytochrome-c oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21211 | - | - | - | - | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
21211 | faeces of a chicken | Germany | DEU | Europe | |
122045 | Chicken | Germany | DEU | Europe | 2012-01-02 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Birds | #Chicken |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
21211 | 1 | Risk group (German classification) |
122045 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 21211
- description: Paenochrobactrum pullorum strain 280 from Germany 16S ribosomal RNA gene, partial sequence
- accession: KC494696
- length: 1389
- database: ena
- NCBI tax ID: 1324351
GC content
- @ref: 21211
- GC-content: 48.5-48.8
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21211
culture collection no.: DSM 28192, CIP 110700, LMG 28095
straininfo link
- @ref: 87840
- straininfo: 391702
literature
- topic: Phylogeny
- Pubmed-ID: 24554640
- title: Paenochrobactrum pullorum sp. nov. isolated from a chicken.
- authors: Kampfer P, Poppel MT, Wilharm G, Glaeser SP, Busse HJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.061101-0
- year: 2014
- mesh: Animals, Bacterial Typing Techniques, Brucellaceae/*classification/genetics/isolation & purification, Chickens/genetics/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Germany, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Putrescine/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/chemistry, Ubiquinone/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21211 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28192 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28192) | |
68369 | Automatically annotated from API 20NE | |||
87840 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID391702.1 | |
122045 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110700 | Collection of Institut Pasteur (CIP 110700) |