Strain identifier

BacDive ID: 23810

Type strain: Yes

Species: Paenochrobactrum pullorum

Strain Designation: 280

Strain history: CIP <- 2013, P. Kämpfer, , Giessen Univ., Giessen, Germany: strain 280

NCBI tax ID(s): 1324351 (species)

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General

@ref: 21211

BacDive-ID: 23810

DSM-Number: 28192

keywords: 16S sequence, Bacteria, mesophilic, Gram-positive, rod-shaped

description: Paenochrobactrum pullorum 280 is a mesophilic, Gram-positive, rod-shaped bacterium that was isolated from faeces of a chicken.

NCBI tax id

  • NCBI tax id: 1324351
  • Matching level: species

strain history

@refhistory
21211<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; 280 <- M. Poppel and G. Wilharm
122045CIP <- 2013, P. Kämpfer, , Giessen Univ., Giessen, Germany: strain 280

doi: 10.13145/bacdive23810.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Brucellaceae
  • genus: Paenochrobactrum
  • species: Paenochrobactrum pullorum
  • full scientific name: Paenochrobactrum pullorum Kämpfer et al. 2014

@ref: 21211

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Brucellaceae

genus: Paenochrobactrum

species: Paenochrobactrum pullorum

full scientific name: Paenochrobactrum pullorum Kämpfer et al. 2014

strain designation: 280

type strain: yes

Morphology

cell morphology

  • @ref: 122045
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 21211
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21211TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
122045CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 21211
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
21211catalase+1.11.1.6
21211cytochrome-c oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
21211----+------+--------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
21211faeces of a chickenGermanyDEUEurope
122045ChickenGermanyDEUEurope2012-01-02

isolation source categories

Cat1Cat2Cat3
#Host#Birds#Chicken
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
212111Risk group (German classification)
1220451Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21211
  • description: Paenochrobactrum pullorum strain 280 from Germany 16S ribosomal RNA gene, partial sequence
  • accession: KC494696
  • length: 1389
  • database: ena
  • NCBI tax ID: 1324351

GC content

  • @ref: 21211
  • GC-content: 48.5-48.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21211

culture collection no.: DSM 28192, CIP 110700, LMG 28095

straininfo link

  • @ref: 87840
  • straininfo: 391702

literature

  • topic: Phylogeny
  • Pubmed-ID: 24554640
  • title: Paenochrobactrum pullorum sp. nov. isolated from a chicken.
  • authors: Kampfer P, Poppel MT, Wilharm G, Glaeser SP, Busse HJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.061101-0
  • year: 2014
  • mesh: Animals, Bacterial Typing Techniques, Brucellaceae/*classification/genetics/isolation & purification, Chickens/genetics/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Germany, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Putrescine/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/chemistry, Ubiquinone/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21211Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28192Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28192)
68369Automatically annotated from API 20NE
87840Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID391702.1
122045Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110700Collection of Institut Pasteur (CIP 110700)