Strain identifier
BacDive ID: 23803
Type strain: 
Species: Bosea sp.
Strain Designation: CRIB-10
Strain history: <- G. Greub, Univ. Lausanne, Switzerland; CRIB-10
NCBI tax ID(s): 378404 (species)
version 9.3 (current version)
General
@ref: 20474
BacDive-ID: 23803
DSM-Number: 18164
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Bosea sp. CRIB-10 is a mesophilic, Gram-negative bacterium that was isolated from river water.
NCBI tax id
- NCBI tax id: 378404
- Matching level: species
strain history
- @ref: 20474
- history: <- G. Greub, Univ. Lausanne, Switzerland; CRIB-10
doi: 10.13145/bacdive23803.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Boseaceae
- genus: Bosea
- species: Bosea sp.
- full scientific name: Bosea Das et al. 1996
@ref: 20474
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Boseaceae
genus: Bosea
species: Bosea sp.
full scientific name: Bosea sp.
strain designation: CRIB-10
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 97.833 |
| 125439 | negative | 97.8 |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 20474 | REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) | yes | https://mediadive.dsmz.de/medium/830c | Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 20474 | BOSEA MEDIUM (DSMZ Medium 1052) | yes | https://mediadive.dsmz.de/medium/1052 | Name: BOSEA MEDIUM (DSMZ Medium 1052) Composition: Agar 15.0 g/l ACES 10.0 g/l Yeast extract 10.0 g/l Activated charcoal 2.0 g/l Distilled water |
culture temp
- @ref: 20474
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 98.5
spore formation
- @ref: 125439
- spore formation: no
- confidence: 97.6
Isolation, sampling and environmental information
isolation
- @ref: 20474
- sample type: river water
- geographic location: Morsang sur Orge
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #River (Creek)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bosea sp. CRIB-10 DSM 18164 | GCA_900112185 | contig | ncbi | 378404 |
| 66792 | Bosea sp. DSM 18164 | 1881058.3 | wgs | patric | 378404 |
| 66792 | Bosea sp. DSM 18164 | 2675903224 | draft | img | 1881058 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.833 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.476 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.713 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.289 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.929 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 73.897 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 97.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 62.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 97.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.5 |
External links
@ref: 20474
culture collection no.: DSM 18164
straininfo link
- @ref: 87833
- straininfo: 407317
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20474 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18164 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18164) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 87833 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407317.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |