Strain identifier
BacDive ID: 23782
Type strain:
Species: Bartonella callosciuri
Strain Designation: BR11-1
Strain history: <- S Maruyama, Nihon Univ., Japan
NCBI tax ID(s): 686223 (species)
General
@ref: 20452
BacDive-ID: 23782
DSM-Number: 28538
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped, animal pathogen
description: Bartonella callosciuri BR11-1 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from blood of tricolored squirrel ; imported pet.
NCBI tax id
- NCBI tax id: 686223
- Matching level: species
strain history
@ref | history |
---|---|
20452 | <- KCTC <- S. Sato; BR11-1 |
67770 | S. Sato BR11-1. |
67771 | <- S Maruyama, Nihon Univ., Japan |
doi: 10.13145/bacdive23782.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Bartonellaceae
- genus: Bartonella
- species: Bartonella callosciuri
- full scientific name: Bartonella callosciuri Sato et al. 2013
@ref: 20452
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Bartonellaceae
genus: Bartonella
species: Bartonella callosciuri
full scientific name: Bartonella callosciuri Sato et al. 2013
strain designation: BR11-1
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
30683 | negative | 1.15 µm | 0.56 µm | ovoid-shaped | ||
67771 | no | |||||
67771 | negative | |||||
69480 | negative | 99.977 |
colony morphology
- @ref: 20452
- incubation period: 2-3 days
pigmentation
- @ref: 30683
- production: yes
Culture and growth conditions
culture medium
- @ref: 20452
- name: COLUMBIA BLOOD AGAR (DSMZ Medium 429)
- growth: yes
- link: https://mediadive.dsmz.de/medium/429
- composition: Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429; with strain-specific modifications) Composition: Horse blood 100.0 g/l Columbia agar base
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20452 | positive | growth | 37 | mesophilic |
30683 | positive | optimum | 35 | mesophilic |
67770 | positive | growth | 35 | mesophilic |
67771 | positive | growth | 35 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
30683 | aerobe |
67771 | microaerophile |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 100 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30683 | 29016 | arginine | + | carbon source |
30683 | 15428 | glycine | + | carbon source |
30683 | 25017 | leucine | + | carbon source |
30683 | 16296 | D-tryptophan | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
20452 | catalase | - | 1.11.1.6 |
20452 | cytochrome-c oxidase | - | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | country | origin.country | continent |
---|---|---|---|---|---|
20452 | blood of tricolored squirrel (Callosciurus notatus); imported pet | Callosciurus notatus | Japan | JPN | Asia |
67770 | Blood of plantain squirrel (Callosciurus notatus) | Callosciurus notatus | |||
67771 | From blood of plantain squirrel, `Callosciurus notatus` | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Rodentia (Other) |
#Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_972.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_758;99_972&stattab=map
- Last taxonomy: Bartonella
- 16S sequence: AB602530
- Sequence Identity:
- Total samples: 1497
- soil counts: 187
- aquatic counts: 669
- animal counts: 589
- plant counts: 52
Safety information
risk assessment
- @ref: 20452
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20452
- description: Bartonella callosciuri gene for 16S rRNA, partial sequence, strain: BR11-1
- accession: AB602530
- length: 1348
- database: ena
- NCBI tax ID: 686223
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bartonella callosciuri DSM 28538 | GCA_014203215 | scaffold | ncbi | 686223 |
66792 | Bartonella callosciuri strain DSM 28538 | 686223.3 | wgs | patric | 686223 |
66792 | Bartonella callosciuri DSM 28538 | 2861730104 | draft | img | 686223 |
GC content
- @ref: 20452
- GC-content: 35.5
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 97.731 | yes |
gram-positive | no | 98.223 | yes |
anaerobic | no | 97.618 | yes |
aerobic | no | 96.254 | no |
halophile | no | 59.56 | no |
spore-forming | no | 97.707 | no |
glucose-util | no | 50.97 | no |
thermophile | no | 90.216 | yes |
motile | no | 90.322 | no |
glucose-ferment | no | 77.288 | no |
External links
@ref: 20452
culture collection no.: DSM 28538, JCM 17709, KCTC 23909
straininfo link
- @ref: 87814
- straininfo: 401994
literature
- topic: Phylogeny
- Pubmed-ID: 22941296
- title: Bartonella jaculi sp. nov., Bartonella callosciuri sp. nov., Bartonella pachyuromydis sp. nov. and Bartonella acomydis sp. nov., isolated from wild Rodentia.
- authors: Sato S, Kabeya H, Fujinaga Y, Inoue K, Une Y, Yoshikawa Y, Maruyama S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.041939-0
- year: 2012
- mesh: Animals, Bacterial Typing Techniques, Bartonella/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Egypt, Genes, Bacterial, Molecular Sequence Data, Netherlands, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rodentia/*microbiology, Sequence Analysis, DNA, Thailand
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
20452 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28538 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28538) | |||
30683 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27014 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
87814 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401994.1 |