Strain identifier

BacDive ID: 23782

Type strain: Yes

Species: Bartonella callosciuri

Strain Designation: BR11-1

Strain history: <- S Maruyama, Nihon Univ., Japan

NCBI tax ID(s): 686223 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20452

BacDive-ID: 23782

DSM-Number: 28538

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped, animal pathogen

description: Bartonella callosciuri BR11-1 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from blood of tricolored squirrel ; imported pet.

NCBI tax id

  • NCBI tax id: 686223
  • Matching level: species

strain history

@refhistory
20452<- KCTC <- S. Sato; BR11-1
67770S. Sato BR11-1.
67771<- S Maruyama, Nihon Univ., Japan

doi: 10.13145/bacdive23782.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella callosciuri
  • full scientific name: Bartonella callosciuri Sato et al. 2013

@ref: 20452

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella callosciuri

full scientific name: Bartonella callosciuri Sato et al. 2013

strain designation: BR11-1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30683negative1.15 µm0.56 µmovoid-shaped
67771no
67771negative
69480negative99.977

colony morphology

  • @ref: 20452
  • incubation period: 2-3 days

pigmentation

  • @ref: 30683
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20452
  • name: COLUMBIA BLOOD AGAR (DSMZ Medium 429)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/429
  • composition: Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429; with strain-specific modifications) Composition: Horse blood 100.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
20452positivegrowth37mesophilic
30683positiveoptimum35mesophilic
67770positivegrowth35mesophilic
67771positivegrowth35mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30683aerobe
67771microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3068329016arginine+carbon source
3068315428glycine+carbon source
3068325017leucine+carbon source
3068316296D-tryptophan+carbon source

enzymes

@refvalueactivityec
20452catalase-1.11.1.6
20452cytochrome-c oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinent
20452blood of tricolored squirrel (Callosciurus notatus); imported petCallosciurus notatusJapanJPNAsia
67770Blood of plantain squirrel (Callosciurus notatus)Callosciurus notatus
67771From blood of plantain squirrel, `Callosciurus notatus`JapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Rodentia (Other)
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_972.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_758;99_972&stattab=map
  • Last taxonomy: Bartonella
  • 16S sequence: AB602530
  • Sequence Identity:
  • Total samples: 1497
  • soil counts: 187
  • aquatic counts: 669
  • animal counts: 589
  • plant counts: 52

Safety information

risk assessment

  • @ref: 20452
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20452
  • description: Bartonella callosciuri gene for 16S rRNA, partial sequence, strain: BR11-1
  • accession: AB602530
  • length: 1348
  • database: ena
  • NCBI tax ID: 686223

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bartonella callosciuri DSM 28538GCA_014203215scaffoldncbi686223
66792Bartonella callosciuri strain DSM 28538686223.3wgspatric686223
66792Bartonella callosciuri DSM 285382861730104draftimg686223

GC content

  • @ref: 20452
  • GC-content: 35.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno97.731yes
gram-positiveno98.223yes
anaerobicno97.618yes
aerobicno96.254no
halophileno59.56no
spore-formingno97.707no
glucose-utilno50.97no
thermophileno90.216yes
motileno90.322no
glucose-fermentno77.288no

External links

@ref: 20452

culture collection no.: DSM 28538, JCM 17709, KCTC 23909

straininfo link

  • @ref: 87814
  • straininfo: 401994

literature

  • topic: Phylogeny
  • Pubmed-ID: 22941296
  • title: Bartonella jaculi sp. nov., Bartonella callosciuri sp. nov., Bartonella pachyuromydis sp. nov. and Bartonella acomydis sp. nov., isolated from wild Rodentia.
  • authors: Sato S, Kabeya H, Fujinaga Y, Inoue K, Une Y, Yoshikawa Y, Maruyama S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.041939-0
  • year: 2012
  • mesh: Animals, Bacterial Typing Techniques, Bartonella/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Egypt, Genes, Bacterial, Molecular Sequence Data, Netherlands, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rodentia/*microbiology, Sequence Analysis, DNA, Thailand
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20452Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28538Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28538)
30683Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172701428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87814Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401994.1