Strain identifier

BacDive ID: 23778

Type strain: Yes

Species: Bartonella vinsonii subsp. berkhoffii

Strain Designation: 93-CO1, 93-C01

Strain history: CIP <- 1996, E.B. Breitschwerdt, Coll. Vet. Med., Raleigh, NC, USA: strain 93-C01

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20448

BacDive-ID: 23778

DSM-Number: 28220

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Bartonella vinsonii subsp. berkhoffii 93-CO1 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from canine blood.

NCBI tax id

NCBI tax idMatching level
40933subspecies
1408318strain

strain history

@refhistory
20448<- CIP <- E. B. Breitschwerdt; 93-CO1
123849CIP <- 1996, E.B. Breitschwerdt, Coll. Vet. Med., Raleigh, NC, USA: strain 93-C01

doi: 10.13145/bacdive23778.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella vinsonii subsp. berkhoffii
  • full scientific name: Bartonella vinsonii subsp. berkhoffii Kordick et al. 1996

@ref: 20448

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella vinsonii subsp. berkhoffii

full scientific name: Bartonella vinsonii subsp. berkhoffii Kordick et al. 1996

strain designation: 93-CO1, 93-C01

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.978
123849negativerod-shapedno

colony morphology

@refincubation period
204481-2 days
569213 days
123849

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20448COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429; with strain-specific modifications) Composition: Horse blood 100.0 g/l Columbia agar base
34222MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
123849CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
20448positivegrowth37mesophilic
34222positivegrowth37mesophilic
56921positivegrowth37mesophilic
123849positivegrowth30-37mesophilic
123849nogrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 56921
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

@refsaltgrowthtested relationconcentration
123849NaClpositivegrowth0 %
123849NaClnogrowth2 %
123849NaClnogrowth4 %
123849NaClnogrowth6 %
123849NaClnogrowth8 %
123849NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
123849esculin-hydrolysis4853
123849hippurate+hydrolysis606565
123849nitrate-reduction17632
123849nitrite-reduction16301

metabolite production

  • @ref: 123849
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12384915688acetoin-
12384917234glucose-

enzymes

@refvalueactivityec
123849oxidase-
123849beta-galactosidase+3.2.1.23
123849alcohol dehydrogenase-1.1.1.1
123849gelatinase-
123849gamma-glutamyltransferase+2.3.2.2
123849lysine decarboxylase-4.1.1.18
123849ornithine decarboxylase-4.1.1.17
123849phenylalanine ammonia-lyase-4.3.1.24
123849tryptophan deaminase-
123849urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123849-+++-+-----+---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123849-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinentgeographic locationisolation date
20448canine blood
56921Canine blood1993USAUSANorth America
123849Animal, Canine, bloodUnited States of AmericaUSANorth AmericaNorth Carolina1993

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Canidae (Dog)
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_1581.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_1248;99_1581&stattab=map
  • Last taxonomy: Bartonella
  • 16S sequence: L35052
  • Sequence Identity:
  • Total samples: 72
  • soil counts: 3
  • aquatic counts: 2
  • animal counts: 67

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
204482Risk group (German classification)
1238492Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20448
  • description: Bartonella vinsonii subsp. berkhoffii 16S ribosomal RNA gene, partial sequence
  • accession: L35052
  • length: 1432
  • database: ena
  • NCBI tax ID: 40933

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bartonella vinsonii subsp. berkhoffii ATCC 51672 CIP 104960GCA_902825225scaffoldncbi1408318
66792Bartonella vinsonii subsp. berkhoffii ATCC 51672GCA_000518105scaffoldncbi1408318
66792Bartonella vinsonii subsp. berkhoffii ATCC 516721408318.3wgspatric1408318
66792Bartonella vinsonii subsp. berkhoffii ATCC 51672 strain CIP 1049601408318.6wgspatric1408318
66792Bartonella vinsonii berkhoffii ATCC 516722545555862draftimg1408318

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno97.626no
gram-positiveno98.306no
anaerobicno97.6yes
aerobicno95.461no
halophileno61.426no
spore-formingno97.385no
thermophileno87.781yes
glucose-utilno52.137no
motileno88.297no
glucose-fermentno75.247no

External links

@ref: 20448

culture collection no.: DSM 28220, ATCC 51672, CCUG 45779, CIP 104960

straininfo link

  • @ref: 87810
  • straininfo: 43111

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny8782679Bartonella vinsonii subsp. berkhoffii subsp. nov., isolated from dogs; Bartonella vinsonii subsp. vinsonii; and emended description of Bartonella vinsonii.Kordick DL, Swaminathan B, Greene CE, Wilson KH, Whitney AM, O'Connor S, Hollis DG, Matar GM, Steigerwalt AG, Malcolm GB, Hayes PS, Hadfield TL, Breitschwerdt EB, Brenner DJInt J Syst Bacteriol10.1099/00207713-46-3-7041996Animals, Bartonella/*classification/genetics/isolation & purification/metabolism, Bartonella Infections/microbiology/*veterinary, Base Sequence, DNA, Bacterial, Dog Diseases/*microbiology, Dogs, Endocarditis, Bacterial/microbiology/*veterinary, Fatty Acids/analysis, Molecular Sequence Data, Polymerase Chain Reaction/veterinary, Polymorphism, Restriction Fragment Length, RNA, Bacterial, RNA, Ribosomal, 16SGenetics
Enzymology11060089Coyotes (Canis latrans) as the reservoir for a human pathogenic Bartonella sp.: molecular epidemiology of Bartonella vinsonii subsp. berkhoffii infection in coyotes from central coastal California.Chang CC, Kasten RW, Chomel BB, Simpson DC, Hew CM, Kordick DL, Heller R, Piemont Y, Breitschwerdt EBJ Clin Microbiol10.1128/JCM.38.11.4193-4200.20002000Animals, Antibodies, Bacterial/blood, Bacteremia/microbiology/veterinary, Bacterial Typing Techniques/methods, Bartonella/classification/genetics/*isolation & purification, Bartonella Infections/epidemiology/microbiology/*veterinary, California/epidemiology, Carnivora/*microbiology, Child, *Disease Reservoirs, Dogs, Electrophoresis, Gel, Pulsed-Field/methods, Humans, Molecular Epidemiology, Polymerase Chain Reaction/methods, Polymorphism, Restriction Fragment Length, ZoonosesPhylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20448Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28220Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28220)
34222Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16926
56921Curators of the CCUGhttps://www.ccug.se/strain?id=45779Culture Collection University of Gothenburg (CCUG) (CCUG 45779)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87810Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID43111.1
123849Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104960Collection of Institut Pasteur (CIP 104960)