Strain identifier

BacDive ID: 23772

Type strain: Yes

Species: Pseudogracilibacillus auburnensis

Strain Designation: P-207

Strain history: CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain P-207, Ornithinibacillus-like

NCBI tax ID(s): 1494959 (species)

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General

@ref: 21343

BacDive-ID: 23772

DSM-Number: 28556

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile

description: Pseudogracilibacillus auburnensis P-207 is a spore-forming, mesophilic, motile bacterium that was isolated from rhizospere soil of a corn plant Zea mays.

NCBI tax id

  • NCBI tax id: 1494959
  • Matching level: species

strain history

@refhistory
21343<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; P207 <- J. Mcinroy
116551CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain P-207, Ornithinibacillus-like

doi: 10.13145/bacdive23772.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Pseudogracilibacillus
  • species: Pseudogracilibacillus auburnensis
  • full scientific name: Pseudogracilibacillus auburnensis Glaeser et al. 2014

@ref: 21343

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Pseudogracilibacillus

species: Pseudogracilibacillus auburnensis

full scientific name: Pseudogracilibacillus auburnensis Glaeser et al. 2014

strain designation: P-207

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes95.206
69480100positive
116551yespositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21343CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
116551CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 21343
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes99
69480yes100

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
21343rhizospere soil of a corn plant Zea maysZea maysAuburnUSAUSANorth America
116551Environment, SoilPennsylvaniaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_117882.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2010;96_19777;97_24541;98_79568;99_117882&stattab=map
  • Last taxonomy: Pseudogracilibacillus auburnensis subclade
  • 16S sequence: KJ490639
  • Sequence Identity:
  • Total samples: 80
  • soil counts: 30
  • aquatic counts: 4
  • animal counts: 38
  • plant counts: 8

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
213431Risk group (German classification)
1165511Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21343
  • description: Pseudogracilibacillus auburnensis strain P-207 16S ribosomal RNA gene, partial sequence
  • accession: KJ490639
  • length: 1444
  • database: ena
  • NCBI tax ID: 1494959

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudogracilibacillus auburnensis DSM 28556GCA_003201975scaffoldncbi1494959
66792Pseudogracilibacillus auburnensis strain DSM 285561494959.3wgspatric1494959
66792Pseudogracilibacillus auburnensis DSM 285562770939551draftimg1494959

GC content

  • @ref: 21343
  • GC-content: 34
  • method: fluorimetric

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes99no
flagellatedyes75.074no
gram-positiveyes82.362no
anaerobicno98.766no
halophileyes73.339no
spore-formingyes91.933no
thermophileno97.813yes
glucose-utilyes81.758no
aerobicyes91.556no
motileyes89.337no
glucose-fermentno92.553no

External links

@ref: 21343

culture collection no.: DSM 28556, CCM 8509, CIP 110797, LMG 28212

straininfo link

  • @ref: 87807
  • straininfo: 392877

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24801155Pseudogracilibacillus auburnensis gen. nov., sp. nov., isolated from the rhizosphere of Zea mays.Glaeser SP, McInroy JA, Busse HJ, Kampfer PInt J Syst Evol Microbiol10.1099/ijs.0.064584-02014Alabama, Bacillaceae/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Polyamines/chemistry, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry, Zea mays/*microbiologyGenetics
Phylogeny27264911Pseudogracilibacillus marinus sp. nov., isolated from a biofilm formed in coastal seawater.Verma P, Saravanan N, Jia B, Jeon CO, Dharani G, Somasundaram ST, Kirubagaran RInt J Syst Evol Microbiol10.1099/ijsem.0.0012122016Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, *Biofilms, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, India, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNATranscriptome
Phylogeny29125459Pseudogracilibacillus endophyticus sp. nov., a moderately thermophilic and halophilic species isolated from plant root.Park J, Kim MK, Yun BR, Han JH, Kim SBInt J Syst Evol Microbiol10.1099/ijsem.0.0024752017Bacillaceae/classification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Oenothera biennis/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21343Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28556Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28556)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87807Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID392877.1
116551Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110797Collection of Institut Pasteur (CIP 110797)