Strain identifier
BacDive ID: 23767
Type strain: 
Species: Fictibacillus enclensis
Strain Designation: NIO-1003
Strain history: <- S. G. Dastager, National Institute of Oceanography, Mumbai, India; NIO-1003
NCBI tax ID(s): 1017270 (species)
version 8.1 (current version)
General
@ref: 21264
BacDive-ID: 23767
DSM-Number: 25142
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, motile
description: Fictibacillus enclensis NIO-1003 is a spore-forming, motile bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1017270
- Matching level: species
strain history
- @ref: 21264
- history: <- S. G. Dastager, National Institute of Oceanography, Mumbai, India; NIO-1003
doi: 10.13145/bacdive23767.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Fictibacillus
- species: Fictibacillus enclensis
- full scientific name: Fictibacillus enclensis Dastager et al. 2014
@ref: 21264
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Fictibacillus
species: Fictibacillus enclensis
full scientific name: Fictibacillus enclensis Dastager et al. 2014
strain designation: NIO-1003
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.503 | |
| 69480 | 100 | positive |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 21264
- sample type: marine sediment
- geographic location: Goa Province, Chorao Island (15° 32' 34'' N and 73° 55' 15'' E)
- country: India
- origin.country: IND
- continent: Asia
- latitude: 15.5428
- longitude: 73.9208
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_23655.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1870;97_3456;98_5986;99_23655&stattab=map
- Last taxonomy: Fictibacillus
- 16S sequence: JF893461
- Sequence Identity:
- Total samples: 233
- soil counts: 130
- aquatic counts: 48
- animal counts: 32
- plant counts: 23
Safety information
risk assessment
- @ref: 21264
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21264
- description: Fictibacillus enclensis strain NIO-1003 from India 16S ribosomal RNA gene, partial sequence
- accession: JF893461
- length: 1419
- database: ena
- NCBI tax ID: 1017270
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Fictibacillus enclensis NIO-1003 | GCA_900094955 | scaffold | ncbi | 1017270 |
| 66792 | Fictibacillus enclensis NIO-1003 | GCA_001457035 | scaffold | ncbi | 1017270 |
| 66792 | Fictibacillus enclensis strain NIO-1003 | 1017270.4 | wgs | patric | 1017270 |
| 66792 | Fictibacillus enclensis NIO-1003 | 2616645019 | draft | img | 1017270 |
| 66792 | Fictibacillus enclensis NIO-1003 | 2802429306 | draft | img | 1017270 |
GC content
- @ref: 21264
- GC-content: 42.6
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 88.838 | no |
| flagellated | yes | 74.371 | no |
| gram-positive | yes | 90.609 | no |
| anaerobic | no | 98.001 | no |
| aerobic | yes | 88.691 | no |
| halophile | no | 65.325 | no |
| spore-forming | yes | 94.981 | no |
| glucose-ferment | no | 91.604 | no |
| thermophile | no | 89.422 | no |
| glucose-util | yes | 89.607 | no |
External links
@ref: 21264
culture collection no.: DSM 25142, NCIM 5458
literature
- topic: Phylogeny
- Pubmed-ID: 24343101
- title: Fictibacillus enclensis sp. nov., isolated from marine sediment.
- authors: Dastager SG, Mawlankar R, Srinivasan K, Tang SK, Lee JC, Ramana VV, Shouche YS
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-013-0097-9
- year: 2013
- mesh: Bacillaceae/chemistry/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21264 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25142 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25142) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |