Strain identifier

BacDive ID: 23766

Type strain: Yes

Species: Fictibacillus phosphorivorans

Strain Designation: Ca7

Strain history: CIP <- 2012, P. Kämfper, Justus-Liebig Universität Gissen, Germany: strain Ca7

NCBI tax ID(s): 1221500 (species)

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General

@ref: 21263

BacDive-ID: 23766

DSM-Number: 26093

keywords: 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-positive

description: Fictibacillus phosphorivorans Ca7 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from waste water of bioreactor.

NCBI tax id

  • NCBI tax id: 1221500
  • Matching level: species

strain history

@refhistory
21263<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; Ca7 <- J. Zimmermann, RWTH Aachen
121808CIP <- 2012, P. Kämfper, Justus-Liebig Universität Gissen, Germany: strain Ca7

doi: 10.13145/bacdive23766.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Fictibacillus
  • species: Fictibacillus phosphorivorans
  • full scientific name: Fictibacillus phosphorivorans Glaeser et al. 2013

@ref: 21263

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Fictibacillus

species: Fictibacillus phosphorivorans

full scientific name: Fictibacillus phosphorivorans Glaeser et al. 2013

strain designation: Ca7

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthmotilitycell shape
30993positive2.5 µm0.9 µmno
121808positiveyesrod-shaped

pigmentation

  • @ref: 30993
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21263TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
121808CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328

culture temp

@refgrowthtypetemperaturerange
21263positivegrowth28mesophilic
30993positivegrowth15-36
30993positiveoptimum29mesophilic

culture pH

@refabilitytypepHPH range
30993positivegrowth6.5-11.5alkaliphile
30993positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30993
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 30993
  • spore formation: yes

halophily

  • @ref: 30993
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3099330089acetate+carbon source
3099316449alanine+carbon source
3099317234glucose+carbon source
3099324996lactate+carbon source
3099325115malate+carbon source
3099317306maltose+carbon source
3099337684mannose+carbon source
30993506227N-acetylglucosamine+carbon source
3099317272propionate+carbon source
3099315361pyruvate+carbon source
3099333942ribose+carbon source
3099317814salicin+carbon source
3099317822serine+carbon source
3099317992sucrose+carbon source
3099327082trehalose+carbon source

enzymes

  • @ref: 30993
  • value: urease
  • activity: +
  • ec: 3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
21263waste water of bioreactorAachenGermanyDEUEurope
121808Environment, Waster water, bioreactorAachenGermanyDEUEurope2009

isolation source categories

Cat1Cat2Cat3
#Engineered#Bioreactor
#Engineered#Waste#Wastewater

taxonmaps

  • @ref: 69479
  • File name: preview.99_3603.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1870;97_2247;98_2758;99_3603&stattab=map
  • Last taxonomy: Fictibacillus
  • 16S sequence: JX258924
  • Sequence Identity:
  • Total samples: 23867
  • soil counts: 12226
  • aquatic counts: 5486
  • animal counts: 4217
  • plant counts: 1938

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
212631Risk group (German classification)
1218081Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21263
  • description: Fictibacillus phosphorivorans strain Ca7 16S ribosomal RNA gene, partial sequence
  • accession: JX258924
  • length: 1444
  • database: ena
  • NCBI tax ID: 1221500

GC content

@refGC-contentmethod
2126340.3high performance liquid chromatography (HPLC)
3099340.3

External links

@ref: 21263

culture collection no.: DSM 26093, CCM 8426, LMG 27063, CIP 110536

straininfo link

  • @ref: 87802
  • straininfo: 397415

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23355698Fictibacillus phosphorivorans gen. nov., sp. nov. and proposal to reclassify Bacillus arsenicus, Bacillus barbaricus, Bacillus macauensis, Bacillus nanhaiensis, Bacillus rigui, Bacillus solisalsi and Bacillus gelatini in the genus Fictibacillus.Glaeser SP, Dott W, Busse HJ, Kampfer PInt J Syst Evol Microbiol10.1099/ijs.0.049171-02013Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Polyamines/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny29116040Fictibacillus aquaticus sp. nov., isolated from downstream river water.Pal D, Bhardwaj A, Kaur N, Sudan SK, Bisht B, Kumari M, Vyas B, Krishnamurthi S, Mayilraj SInt J Syst Evol Microbiol10.1099/ijsem.0.0024742017Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny29802421Fictibacillus iocasae sp. nov., isolated from the deep-sea sediment in Pacmanus, Manus Basin.Wang HL, Zhang J, Sun LArch Microbiol10.1007/s00203-018-1527-x2018Bacillaceae/classification/genetics/*isolation & purification/metabolism, Base Composition, Cell Wall/metabolism, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/classification/genetics/metabolismMetabolism

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21263Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26093Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26093)
30993Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172732328776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87802Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397415.1
121808Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110536Collection of Institut Pasteur (CIP 110536)