Strain identifier
BacDive ID: 23765
Type strain: 
Species: Saliterribacillus persicus
Strain Designation: X4B
Strain history: <- M A Amoozegar, Univ. of Tehran, Iran
NCBI tax ID(s): 930114 (species)
version 8.1 (current version)
General
@ref: 21242
BacDive-ID: 23765
DSM-Number: 27696
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Saliterribacillus persicus X4B is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 930114
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21242 | <- KCTC; KCTC 13827 |
| 67771 | <- M A Amoozegar, Univ. of Tehran, Iran |
doi: 10.13145/bacdive23765.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Saliterribacillus
- species: Saliterribacillus persicus
- full scientific name: Saliterribacillus persicus Amoozegar et al. 2013
@ref: 21242
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Saliterribacillus
species: Saliterribacillus persicus
full scientific name: Saliterribacillus persicus Amoozegar et al. 2013
strain designation: X4B
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 30671 | positive | 5.5 µm | 0.5 µm | rod-shaped | yes | |
| 67771 | rod-shaped | yes | ||||
| 67771 | positive | |||||
| 69480 | yes | 97.147 | ||||
| 69480 | positive | 100 |
pigmentation
- @ref: 30671
- production: yes
Culture and growth conditions
culture medium
- @ref: 21242
- name: MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434)
- growth: yes
- link: https://mediadive.dsmz.de/medium/434
- composition: Name: MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434) Composition: NaCl 81.0 g/l Yeast extract 10.0 g/l MgSO4 x 7 H2O 9.6 g/l MgCl2 x 6 H2O 7.0 g/l Proteose peptone no. 3 5.0 g/l KCl 2.0 g/l Glucose 1.0 g/l CaCl2 0.36 g/l NaHCO3 0.06 g/l NaBr 0.026 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21242 | positive | growth | 35 | mesophilic |
| 30671 | positive | growth | 20-45 | |
| 30671 | positive | optimum | 35 | mesophilic |
| 67771 | positive | growth | 35 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30671 | positive | growth | 06-08 |
| 30671 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30671 | aerobe |
| 67771 | aerobe |
spore formation
| @ref | spore formation | type of spore | confidence |
|---|---|---|---|
| 30671 | yes | ||
| 67771 | yes | endospore | |
| 69481 | yes | 100 | |
| 69480 | yes | 99.999 |
halophily
- @ref: 30671
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 7.5 %
observation
- @ref: 67771
- observation: quinones: MK-7, MK-6
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30671 | 22599 | arabinose | + | carbon source |
| 30671 | 17057 | cellobiose | + | carbon source |
| 30671 | 28757 | fructose | + | carbon source |
| 30671 | 28260 | galactose | + | carbon source |
| 30671 | 17234 | glucose | + | carbon source |
| 30671 | 17754 | glycerol | + | carbon source |
| 30671 | 17716 | lactose | + | carbon source |
| 30671 | 17306 | maltose | + | carbon source |
| 30671 | 29864 | mannitol | + | carbon source |
| 30671 | 37684 | mannose | + | carbon source |
| 30671 | 28053 | melibiose | + | carbon source |
| 30671 | 16634 | raffinose | + | carbon source |
| 30671 | 33942 | ribose | + | carbon source |
| 30671 | 17992 | sucrose | + | carbon source |
| 30671 | 27082 | trehalose | + | carbon source |
| 30671 | 18222 | xylose | + | carbon source |
| 30671 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30671 | catalase | + | 1.11.1.6 |
| 30671 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 21242 | soil | Aran-Bidgol Salt Lake | Iran | IRN | Asia |
| 67771 | From brine | Aran-Bidgol Salt Lake | Iran | IRN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_20879.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_6058;97_12821;98_15772;99_20879&stattab=map
- Last taxonomy: Saliterribacillus persicus subclade
- 16S sequence: HQ433437
- Sequence Identity:
- Total samples: 10
- soil counts: 3
- aquatic counts: 4
- plant counts: 3
Safety information
risk assessment
- @ref: 21242
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21242
- description: Saliterribacillus persicus strain X4B 16S ribosomal RNA gene, partial sequence
- accession: HQ433437
- length: 1472
- database: ena
- NCBI tax ID: 930114
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Saliterribacillus persicus DSM 27696 | GCA_003337485 | scaffold | ncbi | 930114 |
| 66792 | Saliterribacillus persicus strain DSM 27696 | 930114.3 | wgs | patric | 930114 |
| 66792 | Saliterribacillus persicus DSM 27696 | 2770939512 | draft | img | 930114 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 21242 | 35.2 | high performance liquid chromatography (HPLC) |
| 30671 | 35.2 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 90.607 | yes |
| flagellated | yes | 86.633 | no |
| gram-positive | yes | 90.148 | no |
| anaerobic | no | 99.374 | yes |
| aerobic | yes | 89.344 | yes |
| halophile | yes | 90.627 | no |
| spore-forming | yes | 93.355 | yes |
| glucose-util | yes | 91.991 | no |
| thermophile | no | 99.433 | no |
| glucose-ferment | no | 79.211 | no |
External links
@ref: 21242
culture collection no.: DSM 27696, IBRC-M 10629, KCTC 13827
straininfo link
- @ref: 87801
- straininfo: 398462
literature
- topic: Phylogeny
- Pubmed-ID: 22447700
- title: Saliterribacillus persicus gen. nov., sp. nov., a moderately halophilic bacterium isolated from a hypersaline lake.
- authors: Amoozegar MA, Bagheri M, Didari M, Shahzedeh Fazeli SA, Schumann P, Sanchez-Porro C, Ventosa A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.041640-0
- year: 2012
- mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Iran, Molecular Sequence Data, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Sodium Chloride, Spores, Bacterial/classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/analysis, *Water Microbiology
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||||
| 21242 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27696 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27696) | ||||
| 30671 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27002 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | ||||
| 87801 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398462.1 |