Strain identifier

BacDive ID: 23763

Type strain: Yes

Species: Salsuginibacillus halophilus

Strain Designation: halo-1

Strain history: <- NBRC <- CGMCC 1.7653 <- S.-J. Cao, China Agricultural Univ., Beijing, PR China; halo-1

NCBI tax ID(s): 517424 (species)

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General

@ref: 21177

BacDive-ID: 23763

DSM-Number: 28389

keywords: 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Salsuginibacillus halophilus halo-1 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from sediment.

NCBI tax id

  • NCBI tax id: 517424
  • Matching level: species

strain history

  • @ref: 21177
  • history: <- NBRC <- CGMCC 1.7653 <- S.-J. Cao, China Agricultural Univ., Beijing, PR China; halo-1

doi: 10.13145/bacdive23763.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Salsuginibacillus
  • species: Salsuginibacillus halophilus
  • full scientific name: Salsuginibacillus halophilus Cao et al. 2010

@ref: 21177

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Salsuginibacillus

species: Salsuginibacillus halophilus

full scientific name: Salsuginibacillus halophilus Cao et al. 2010

strain designation: halo-1

type strain: yes

Morphology

cell morphology

  • @ref: 29284
  • gram stain: positive
  • cell length: 3.5 µm
  • cell width: 0.65 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 29284
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 21177
  • name: BACILLUS FILIFORMIS MEDIUM (DSMZ Medium 992)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/992
  • composition: Name: BACILLUS FILIFORMIS MEDIUM (DSMZ Medium 992; with strain-specific modifications) Composition: NaCl 100.0 g/l Yeast extract 10.0 g/l Polypeptone 7.5 g/l Sodium citrate 3.0 g/l Na2CO3 3.0 g/l KCl 2.0 g/l MgSO4 x 7 H2O 1.0 g/l FeSO4 x 7 H2O 0.05 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21177positivegrowth30mesophilic
29284positivegrowth18-50
29284positiveoptimum37mesophilic

culture pH

@refabilitytypepHPH range
29284positivegrowth05-10alkaliphile
29284positiveoptimum9

Physiology and metabolism

spore formation

  • @ref: 29284
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
29284NaClpositivegrowth09-30 %
29284NaClpositiveoptimum19 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2928417057cellobiose+carbon source
2928417234glucose+carbon source
2928417754glycerol+carbon source
2928417716lactose+carbon source
2928417306maltose+carbon source
2928429864mannitol+carbon source
2928426546rhamnose+carbon source
2928417814salicin+carbon source
2928430911sorbitol+carbon source
2928417992sucrose+carbon source
2928427082trehalose+carbon source
2928417632nitrate+reduction

metabolite production

  • @ref: 29284
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
29284catalase+1.11.1.6
29284gelatinase+
29284urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 21177
  • sample type: sediment
  • geographic location: Xiarinaoer soda lake
  • country: Mongolia
  • origin.country: MNG
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_49277.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4889;96_22265;97_27818;98_35440;99_49277&stattab=map
  • Last taxonomy: Salsuginibacillus halophilus subclade
  • 16S sequence: EU581835
  • Sequence Identity:
  • Total samples: 21
  • aquatic counts: 15
  • animal counts: 6

Safety information

risk assessment

  • @ref: 21177
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21177
  • description: Salsuginibacillus halophilus strain halo-1 16S ribosomal RNA gene, partial sequence
  • accession: EU581835
  • length: 1438
  • database: ena
  • NCBI tax ID: 517424

GC content

  • @ref: 21177
  • GC-content: 46.4

External links

@ref: 21177

culture collection no.: DSM 28389, CGMCC 1.7653, NBRC 104934

straininfo link

  • @ref: 87799
  • straininfo: 400062

literature

  • topic: Phylogeny
  • Pubmed-ID: 19667365
  • title: Salsuginibacillus halophilus sp. nov., a halophilic bacterium isolated from a soda lake.
  • authors: Cao SJ, Qu JH, Yuan HL, Li BZ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.010181-0
  • year: 2009
  • mesh: Environment, Fatty Acids/analysis, Genotype, Gram-Positive Rods/classification/*genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phenotype, Phylogeny, Pigmentation, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/*genetics, Sodium Chloride/*metabolism, Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21177Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28389Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28389)
29284Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172570028776041
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87799Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400062.1