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Strain identifier

BacDive ID: 23758

Type strain: Yes

Species: Lysinibacillus composti

Strain Designation: NCCP-36

Strain history: <- I Ahmed, NCCP, Pakistan

NCBI tax ID(s): 720633 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21165

BacDive-ID: 23758

DSM-Number: 24785

keywords: motile, mesophilic, spore-forming, aerobe, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Lysinibacillus composti NCCP-36 is an aerobe, spore-forming, mesophilic bacterium that was isolated from aerobic compost of fruit and vegetable wastes.

NCBI tax id

  • NCBI tax id: 720633
  • Matching level: species

strain history

doi: 10.13145/bacdive23758.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Lysinibacillus
  • species: Lysinibacillus composti
  • full scientific name: Lysinibacillus composti Hayat et al. 2014

@ref: 21165

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Lysinibacillus

species: Lysinibacillus composti

full scientific name: Lysinibacillus composti Hayat et al. 2014

strain designation: NCCP-36

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stain
67771rod-shapedyes
67771negative

Culture and growth conditions

culture medium

  • @ref: 21165
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21165positivegrowth30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

  • @ref: 67771
  • type of spore: endospore
  • spore formation: yes

murein

  • @ref: 21165
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

observation

@refobservation
67770quinones: MK-7
67771quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21165aerobic compost of fruit and vegetable wastesRawaldpindi, research farm of the Pir Mehr Ali Shah Arid Agriculture UniversityPakistanPAKAsia
67770Compost of fruit and vegetable wastes prepared aerobicallyPMAS Arid Agriculture University, RawalpindiPakistanPAKAsia
67771From aerobic compost of fruit and vegetable wastesResearch farm of the Pir Mehr Ali Shah(PMAS) Arid Agriculture University, RawalpindiPakistanPAKAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Domestic waste
#Host#Plants#Decomposing plant

Safety information

risk assessment

  • @ref: 21165
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21165
  • description: Lysinibacillus composti gene for 16S rRNA, partial sequence
  • accession: AB547124
  • length: 1475
  • database: ena
  • NCBI tax ID: 720633

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lysinibacillus composti DSM 24785GCA_016908465contigncbi720633
66792Lysinibacillus composti strain DSM 24785720633.8wgspatric720633
66792Lysinibacillus composti DSM 247852901136890draftimg720633

GC content

@refGC-contentmethod
2116537.0high performance liquid chromatography (HPLC)
6777037high performance liquid chromatography (HPLC)
6777137.0

External links

@ref: 21165

culture collection no.: DSM 24785, JCM 18777, KCTC 13796, NCCP 36

straininfo link

@refpassport
20218http://www.straininfo.net/strains/898043
20218http://www.straininfo.net/strains/898044
20218http://www.straininfo.net/strains/898045

literature

  • topic: Phylogeny
  • Pubmed-ID: 31124045
  • title: Isolation and characterization of a novel piezotolerant bacterium Lysinibacillus yapensis sp. nov., from deep-sea sediment of the Yap Trench, Pacific Ocean.
  • authors: Yu L, Tang X, Wei S, Qiu Y, Xu X, Xu G, Wang Q, Yang Q
  • journal: J Microbiol
  • DOI: 10.1007/s12275-019-8709-3
  • year: 2019
  • mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques/methods, Geologic Sediments/*microbiology, Pacific Ocean, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Enzymology

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21165Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24785Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24785)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc