Strain identifier
BacDive ID: 23758
Type strain:
Species: Lysinibacillus composti
Strain history: <- I Ahmed, NCCP, Pakistan
NCBI tax ID(s): 720633 (species)
General
@ref: 21165
BacDive-ID: 23758
DSM-Number: 24785
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, rod-shaped
description: Lysinibacillus composti DSM 24785 is an aerobe, spore-forming, mesophilic bacterium that was isolated from aerobic compost of fruit and vegetable wastes.
NCBI tax id
- NCBI tax id: 720633
- Matching level: species
strain history
@ref | history |
---|---|
21165 | <- I. Ahmed, National Agricultural Research Centre, Pakistan; NCCP-36 <- R. Hayat and I. Ahmed |
67770 | I. Ahmed NCCP-36. |
67771 | <- I Ahmed, NCCP, Pakistan |
doi: 10.13145/bacdive23758.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Lysinibacillus
- species: Lysinibacillus composti
- full scientific name: Lysinibacillus composti Hayat et al. 2014
@ref: 21165
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Lysinibacillus
species: Lysinibacillus composti
full scientific name: Lysinibacillus composti Hayat et al. 2014
type strain: yes
Morphology
cell morphology
@ref | cell shape | motility | gram stain |
---|---|---|---|
67771 | rod-shaped | yes | |
67771 | negative |
Culture and growth conditions
culture medium
- @ref: 21165
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21165 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 67771
- type of spore: endospore
- spore formation: yes
murein
- @ref: 21165
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
observation
@ref | observation |
---|---|
67770 | quinones: MK-7 |
67771 | quinones: MK-7 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
21165 | aerobic compost of fruit and vegetable wastes | Rawaldpindi, research farm of the Pir Mehr Ali Shah Arid Agriculture University | Pakistan | PAK | Asia |
67770 | Compost of fruit and vegetable wastes prepared aerobically | PMAS Arid Agriculture University, Rawalpindi | Pakistan | PAK | Asia |
67771 | From aerobic compost of fruit and vegetable wastes | Research farm of the Pir Mehr Ali Shah(PMAS) Arid Agriculture University, Rawalpindi | Pakistan | PAK | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Waste | #Domestic waste |
#Host | #Plants | #Decomposing plant |
taxonmaps
- @ref: 69479
- File name: preview.99_61334.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3452;97_5123;98_7864;99_61334&stattab=map
- Last taxonomy: Lysinibacillus
- 16S sequence: AB547124
- Sequence Identity:
- Total samples: 647
- soil counts: 441
- aquatic counts: 50
- animal counts: 119
- plant counts: 37
Safety information
risk assessment
- @ref: 21165
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21165
- description: Lysinibacillus composti gene for 16S rRNA, partial sequence
- accession: AB547124
- length: 1475
- database: ena
- NCBI tax ID: 720633
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lysinibacillus composti DSM 24785 | GCA_016908465 | contig | ncbi | 720633 |
66792 | Lysinibacillus composti strain DSM 24785 | 720633.8 | wgs | patric | 720633 |
66792 | Lysinibacillus composti DSM 24785 | 2901136890 | draft | img | 720633 |
GC content
@ref | GC-content | method |
---|---|---|
21165 | 37.0 | high performance liquid chromatography (HPLC) |
67770 | 37 | high performance liquid chromatography (HPLC) |
67771 | 37.0 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 90.447 | yes |
flagellated | yes | 85.557 | no |
gram-positive | yes | 79.093 | yes |
anaerobic | no | 98.293 | no |
aerobic | yes | 90.164 | yes |
halophile | no | 80.502 | no |
spore-forming | yes | 95.517 | yes |
thermophile | no | 99.586 | yes |
glucose-util | yes | 79.116 | no |
glucose-ferment | no | 90.343 | no |
External links
@ref: 21165
culture collection no.: DSM 24785, JCM 18777, KCTC 13796, NCCP 36
straininfo link
- @ref: 87794
- straininfo: 402542
literature
- topic: Phylogeny
- Pubmed-ID: 31124045
- title: Isolation and characterization of a novel piezotolerant bacterium Lysinibacillus yapensis sp. nov., from deep-sea sediment of the Yap Trench, Pacific Ocean.
- authors: Yu L, Tang X, Wei S, Qiu Y, Xu X, Xu G, Wang Q, Yang Q
- journal: J Microbiol
- DOI: 10.1007/s12275-019-8709-3
- year: 2019
- mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques/methods, Geologic Sediments/*microbiology, Pacific Ocean, Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Enzymology
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21165 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24785 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24785) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
87794 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402542.1 |