Strain identifier
BacDive ID: 23755
Type strain: 
Species: Terribacillus aidingensis
Strain Designation: YI7-61
Strain history: <- NBRC <- CGMCC 1.8913 <- S.-S. Yang, China Agric. Univ., College Biol. Sci., Beijing; YI7-61
NCBI tax ID(s): 586416 (species)
version 8.1 (current version)
General
@ref: 21155
BacDive-ID: 23755
DSM-Number: 28352
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Terribacillus aidingensis YI7-61 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 586416
- Matching level: species
strain history
- @ref: 21155
- history: <- NBRC <- CGMCC 1.8913 <- S.-S. Yang, China Agric. Univ., College Biol. Sci., Beijing; YI7-61
doi: 10.13145/bacdive23755.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Terribacillus
- species: Terribacillus aidingensis
- full scientific name: Terribacillus aidingensis Liu et al. 2010
@ref: 21155
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Terribacillus
species: Terribacillus aidingensis
full scientific name: Terribacillus aidingensis Liu et al. 2010
strain designation: YI7-61
type strain: yes
Morphology
cell morphology
- @ref: 29625
- gram stain: positive
- cell length: 1.2-3.5 µm
- cell width: 0.3-0.7 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29625
- production: yes
Culture and growth conditions
culture medium
- @ref: 21155
- name: PAYNE, SEGHAL & GIBBONS MEDIUM (DSMZ Medium 1160)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1160
- composition: Name: PAYNE, SEGHAL & GIBBONS MEDIUM (DSMZ Medium 1160) Composition: NaCl 250.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 20.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Trisodium citrate 3.0 g/l KCl 2.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21155 | positive | growth | 30 | mesophilic |
| 29625 | positive | growth | 04-48 | |
| 29625 | positive | optimum | 30-37 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29625 | positive | growth | 05-09 | alkaliphile |
| 29625 | positive | optimum | 06-07 |
Physiology and metabolism
oxygen tolerance
- @ref: 29625
- oxygen tolerance: aerobe
spore formation
- @ref: 29625
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29625 | NaCl | positive | growth | 0.5-21 % |
| 29625 | NaCl | positive | optimum | 03-07 % |
observation
- @ref: 29625
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29625 | 17057 | cellobiose | + | carbon source |
| 29625 | 28757 | fructose | + | carbon source |
| 29625 | 28260 | galactose | + | carbon source |
| 29625 | 17234 | glucose | + | carbon source |
| 29625 | 17716 | lactose | + | carbon source |
| 29625 | 29864 | mannitol | + | carbon source |
| 29625 | 28053 | melibiose | + | carbon source |
| 29625 | 16634 | raffinose | + | carbon source |
| 29625 | 17992 | sucrose | + | carbon source |
| 29625 | 27082 | trehalose | + | carbon source |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 29625 | 16136 | hydrogen sulfide | yes |
| 29625 | 35581 | indole | yes |
metabolite tests
- @ref: 29625
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
- @ref: 29625
- value: cytochrome oxidase
- activity: +
- ec: 1.9.3.1
Isolation, sampling and environmental information
isolation
- @ref: 21155
- sample type: soil
- geographic location: Xinjiang, Aiding salt lake
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_5266.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2557;97_3126;98_3926;99_5266&stattab=map
- Last taxonomy: Terribacillus
- 16S sequence: FJ386524
- Sequence Identity:
- Total samples: 1604
- soil counts: 664
- aquatic counts: 268
- animal counts: 511
- plant counts: 161
Safety information
risk assessment
- @ref: 21155
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21155
- description: Terribacillus aidingensis strain YI7-61 16S ribosomal RNA gene, partial sequence
- accession: FJ386524
- length: 1472
- database: ena
- NCBI tax ID: 586416
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Terribacillus aidingensis CGMCC 1.8913 | GCA_900215625 | scaffold | ncbi | 586416 |
| 66792 | Terribacillus aidingensis strain CGMCC 1.8913 | 586416.5 | wgs | patric | 586416 |
| 66792 | Terribacillus aidingensis CGMCC 1.8913 | 2681812962 | draft | img | 586416 |
GC content
| @ref | GC-content |
|---|---|
| 29625 | 44.6-45.0 |
| 21155 | 45.0 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 69.061 | no |
| gram-positive | yes | 93.657 | yes |
| anaerobic | no | 99.166 | yes |
| aerobic | yes | 92.778 | yes |
| halophile | yes | 86.8 | no |
| spore-forming | yes | 94.991 | yes |
| thermophile | no | 99.737 | yes |
| glucose-util | yes | 89.396 | yes |
| motile | yes | 89.917 | yes |
| glucose-ferment | no | 77.198 | no |
External links
@ref: 21155
culture collection no.: DSM 28352, CGMCC 1.8913, NBRC 105790
straininfo link
- @ref: 87791
- straininfo: 404083
literature
- topic: Phylogeny
- Pubmed-ID: 20118295
- title: Terribacillus aidingensis sp. nov., a moderately halophilic bacterium.
- authors: Liu W, Jiang L, Guo C, Yang SS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.017228-0
- year: 2010
- mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21155 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28352 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28352) | |||
| 29625 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26015 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 87791 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404083.1 |