Strain identifier

BacDive ID: 23740

Type strain: Yes

Species: Thalassobacillus hwangdonensis

Strain Designation: AD-1

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 546108 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20861

BacDive-ID: 23740

DSM-Number: 27650

keywords: 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Thalassobacillus hwangdonensis AD-1 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from tidal flat sediment.

NCBI tax id

  • NCBI tax id: 546108
  • Matching level: species

strain history

@refhistory
20861<- KCTC; KCTC 13254
67771<- JH Yoon, KRIBB

doi: 10.13145/bacdive23740.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Thalassobacillus
  • species: Thalassobacillus hwangdonensis
  • full scientific name: Thalassobacillus hwangdonensis Lee et al. 2010

@ref: 20861

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Thalassobacillus

species: Thalassobacillus hwangdonensis

full scientific name: Thalassobacillus hwangdonensis Lee et al. 2010

strain designation: AD-1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29576positive1.2-3.5 µm0.3-0.7 µmrod-shapedyes
67771rod-shapedyes
67771positive

colony morphology

  • @ref: 61039
  • incubation period: 1 day

pigmentation

  • @ref: 29576
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20861
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 50.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20861positivegrowth30mesophilic
29576positivegrowth15-47
29576positiveoptimum40thermophilic
67771positivegrowth40thermophilic

culture pH

@refabilitytypepHPH range
29576positivegrowth06-09alkaliphile
29576positiveoptimum7-7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29576facultative anaerobe
61039aerobe
67771aerobe

spore formation

@refspore formationtype of spore
29576yes
67771yesendospore

halophily

@refsaltgrowthtested relationconcentration
29576NaClpositivegrowth0-20 %
29576NaClpositiveoptimum05-10 %

observation

@refobservation
29576aggregates in chains
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2957622599arabinose+carbon source
2957628757fructose+carbon source
2957617234glucose+carbon source
2957617306maltose+carbon source

enzymes

  • @ref: 29576
  • value: cytochrome oxidase
  • activity: +
  • ec: 1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
20861tidal flat sedimentcoast of Hwangdo, Yellow SeaRepublic of KoreaKORAsia
61039Soil,tidal flat sedimentYellow Sea,HwangdoRepublic of KoreaKORAsia2007-05-01
67771From tidal flat sediment of the coast of Hwangdo on the Yellow SeaRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Tidal flat
#Environmental#Terrestrial#Sediment

Safety information

risk assessment

  • @ref: 20861
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20861
  • description: Thalassobacillus hwangdonensis strain AD-1 16S ribosomal RNA gene, partial sequence
  • accession: EU817571
  • length: 1522
  • database: ena
  • NCBI tax ID: 546108

GC content

@refGC-contentmethod
2086145.2
6777145.2high performance liquid chromatography (HPLC)

External links

@ref: 20861

culture collection no.: DSM 27650, CCUG 56607, KCTC 13254

straininfo link

  • @ref: 87777
  • straininfo: 401373

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19854876Thalassobacillus hwangdonensis sp. nov., isolated from a tidal flat sediment.Lee SY, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.016204-02009Bacillaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism
Phylogeny20562240Thalassobacillus pellis sp. nov., a moderately halophilic, Gram-positive bacterium isolated from salted hides.Sanchez-Porro C, Yilmaz P, de la Haba RR, Birbir M, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.024778-02010Bacillaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolismMetabolism

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20861Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27650Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27650)
29576Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172596928776041
61039Curators of the CCUGhttps://www.ccug.se/strain?id=56607Culture Collection University of Gothenburg (CCUG) (CCUG 56607)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
87777Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401373.1