Strain identifier
BacDive ID: 23740
Type strain:
Species: Thalassobacillus hwangdonensis
Strain Designation: AD-1
Strain history: <- JH Yoon, KRIBB
NCBI tax ID(s): 546108 (species)
General
@ref: 20861
BacDive-ID: 23740
DSM-Number: 27650
keywords: 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Thalassobacillus hwangdonensis AD-1 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from tidal flat sediment.
NCBI tax id
- NCBI tax id: 546108
- Matching level: species
strain history
@ref | history |
---|---|
20861 | <- KCTC; KCTC 13254 |
67771 | <- JH Yoon, KRIBB |
doi: 10.13145/bacdive23740.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Thalassobacillus
- species: Thalassobacillus hwangdonensis
- full scientific name: Thalassobacillus hwangdonensis Lee et al. 2010
@ref: 20861
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Thalassobacillus
species: Thalassobacillus hwangdonensis
full scientific name: Thalassobacillus hwangdonensis Lee et al. 2010
strain designation: AD-1
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
29576 | positive | 1.2-3.5 µm | 0.3-0.7 µm | rod-shaped | yes |
67771 | rod-shaped | yes | |||
67771 | positive |
colony morphology
- @ref: 61039
- incubation period: 1 day
pigmentation
- @ref: 29576
- production: yes
Culture and growth conditions
culture medium
- @ref: 20861
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 50.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20861 | positive | growth | 30 | mesophilic |
29576 | positive | growth | 15-47 | |
29576 | positive | optimum | 40 | thermophilic |
67771 | positive | growth | 40 | thermophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29576 | positive | growth | 06-09 | alkaliphile |
29576 | positive | optimum | 7-7.5 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
29576 | facultative anaerobe |
61039 | aerobe |
67771 | aerobe |
spore formation
@ref | spore formation | type of spore |
---|---|---|
29576 | yes | |
67771 | yes | endospore |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29576 | NaCl | positive | growth | 0-20 % |
29576 | NaCl | positive | optimum | 05-10 % |
observation
@ref | observation |
---|---|
29576 | aggregates in chains |
67771 | quinones: MK-7 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29576 | 22599 | arabinose | + | carbon source |
29576 | 28757 | fructose | + | carbon source |
29576 | 17234 | glucose | + | carbon source |
29576 | 17306 | maltose | + | carbon source |
enzymes
- @ref: 29576
- value: cytochrome oxidase
- activity: +
- ec: 1.9.3.1
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
20861 | tidal flat sediment | coast of Hwangdo, Yellow Sea | Republic of Korea | KOR | Asia | |
61039 | Soil,tidal flat sediment | Yellow Sea,Hwangdo | Republic of Korea | KOR | Asia | 2007-05-01 |
67771 | From tidal flat sediment of the coast of Hwangdo on the Yellow Sea | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Tidal flat |
#Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 20861
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20861
- description: Thalassobacillus hwangdonensis strain AD-1 16S ribosomal RNA gene, partial sequence
- accession: EU817571
- length: 1522
- database: ena
- NCBI tax ID: 546108
GC content
@ref | GC-content | method |
---|---|---|
20861 | 45.2 | |
67771 | 45.2 | high performance liquid chromatography (HPLC) |
External links
@ref: 20861
culture collection no.: DSM 27650, CCUG 56607, KCTC 13254
straininfo link
- @ref: 87777
- straininfo: 401373
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19854876 | Thalassobacillus hwangdonensis sp. nov., isolated from a tidal flat sediment. | Lee SY, Oh TK, Yoon JH | Int J Syst Evol Microbiol | 10.1099/ijs.0.016204-0 | 2009 | Bacillaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology | Metabolism |
Phylogeny | 20562240 | Thalassobacillus pellis sp. nov., a moderately halophilic, Gram-positive bacterium isolated from salted hides. | Sanchez-Porro C, Yilmaz P, de la Haba RR, Birbir M, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.024778-0 | 2010 | Bacillaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolism | Metabolism |
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
20861 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27650 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27650) | |||
29576 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25969 | 28776041 | |
61039 | Curators of the CCUG | https://www.ccug.se/strain?id=56607 | Culture Collection University of Gothenburg (CCUG) (CCUG 56607) | |||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
87777 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401373.1 |