Strain identifier
BacDive ID: 23739
Type strain:
Species: Ornithinibacillus halophilus
Strain Designation: G8B
Strain history: <- M A Amoozegar, Univ. of Tehran, Iran
NCBI tax ID(s): 930117 (species)
General
@ref: 20701
BacDive-ID: 23739
DSM-Number: 27695
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Ornithinibacillus halophilus G8B is an aerobe, spore-forming, mesophilic bacterium that was isolated from brine.
NCBI tax id
- NCBI tax id: 930117
- Matching level: species
strain history
@ref | history |
---|---|
20701 | <- KCTC; KCTC 13822 <- M. A. Amoozegar; G8B |
67771 | <- M A Amoozegar, Univ. of Tehran, Iran |
doi: 10.13145/bacdive23739.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Ornithinibacillus
- species: Ornithinibacillus halophilus
- full scientific name: Ornithinibacillus halophilus Bagheri et al. 2013
@ref: 20701
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Ornithinibacillus
species: Ornithinibacillus halophilus
full scientific name: Ornithinibacillus halophilus Bagheri et al. 2013
strain designation: G8B
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
30658 | positive | 12 µm | 0.55 µm | rod-shaped | yes |
67771 | rod-shaped | yes | |||
67771 | positive |
pigmentation
- @ref: 30658
- production: yes
Culture and growth conditions
culture medium
- @ref: 20701
- name: MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434)
- growth: yes
- link: https://mediadive.dsmz.de/medium/434
- composition: Name: MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434) Composition: NaCl 81.0 g/l Yeast extract 10.0 g/l MgSO4 x 7 H2O 9.6 g/l MgCl2 x 6 H2O 7.0 g/l Proteose peptone no. 3 5.0 g/l KCl 2.0 g/l Glucose 1.0 g/l CaCl2 0.36 g/l NaHCO3 0.06 g/l NaBr 0.026 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20701 | positive | growth | 37 | mesophilic |
30658 | positive | growth | 20-55 | |
30658 | positive | optimum | 37.5 | mesophilic |
67771 | positive | growth | 35-40 |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30658 | positive | growth | 6.5-8.5 | alkaliphile |
30658 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
30658 | aerobe |
67771 | aerobe |
spore formation
@ref | spore formation | type of spore |
---|---|---|
30658 | yes | |
67771 | yes | endospore |
halophily
- @ref: 30658
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 6 %
murein
- @ref: 20701
- murein short key: A21.04
- type: A4ß L-Orn-D-Asp
observation
- @ref: 67771
- observation: quinones: MK-7, MK-8
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30658 | 16449 | alanine | + | carbon source |
30658 | 16634 | raffinose | + | carbon source |
enzymes
- @ref: 30658
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
20701 | brine | Aran-Bidgol Salt Lake | Iran | IRN | Asia |
67771 | From brine | Aran-Bidgol Salt Lake | Iran | IRN | Asia |
isolation source categories
Cat1 | Cat2 |
---|---|
#Environmental | #Aquatic |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_1516.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_867;97_1015;98_1198;99_1516&stattab=map
- Last taxonomy: Ornithinibacillus halophilus
- 16S sequence: HQ433440
- Sequence Identity:
- Total samples: 39
- soil counts: 16
- aquatic counts: 13
- animal counts: 9
- plant counts: 1
Safety information
risk assessment
- @ref: 20701
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20701
- description: Ornithinibacillus halophilus strain G8B 16S ribosomal RNA gene, partial sequence
- accession: HQ433440
- length: 1487
- database: ena
- NCBI tax ID: 930117
GC content
@ref | GC-content | method |
---|---|---|
20701 | 36.9 | high performance liquid chromatography (HPLC) |
30658 | 36.9 |
External links
@ref: 20701
culture collection no.: DSM 27695, IBRC-M 10683, KCTC 13822
straininfo link
- @ref: 87776
- straininfo: 405706
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22611200 | Ornithinibacillus halophilus sp. nov., a moderately halophilic, Gram-stain-positive, endospore-forming bacterium from a hypersaline lake. | Bagheri M, Amoozegar MA, Schumann P, Didari M, Mehrshad M, Sproer C, Sanchez-Porro C, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.041350-0 | 2012 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Iran, Lakes/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Sodium Chloride, *Water Microbiology | Genetics |
Phylogeny | 29458475 | Ornithinibacillus salinisoli sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil. | Gan L, Zhang H, Long X, Tian J, Wang Z, Zhang Y, Dai Y, Tian Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002580 | 2018 | Alkalies, Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 31184567 | Description of Ornithinibacillus gellani sp. nov., a halophilic bacterium isolated from lake sediment, and emended description of the genus Ornithinibacillus. | Qu JH, Fu YH, Yue YF, Li HF | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003500 | 2019 | Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||||
20701 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27695 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27695) | ||||
30658 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26989 | 28776041 | ||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||||
87776 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405706.1 |