Strain identifier

BacDive ID: 23739

Type strain: Yes

Species: Ornithinibacillus halophilus

Strain Designation: G8B

Strain history: <- M A Amoozegar, Univ. of Tehran, Iran

NCBI tax ID(s): 930117 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20701

BacDive-ID: 23739

DSM-Number: 27695

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Ornithinibacillus halophilus G8B is an aerobe, spore-forming, mesophilic bacterium that was isolated from brine.

NCBI tax id

  • NCBI tax id: 930117
  • Matching level: species

strain history

@refhistory
20701<- KCTC; KCTC 13822 <- M. A. Amoozegar; G8B
67771<- M A Amoozegar, Univ. of Tehran, Iran

doi: 10.13145/bacdive23739.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Ornithinibacillus
  • species: Ornithinibacillus halophilus
  • full scientific name: Ornithinibacillus halophilus Bagheri et al. 2013

@ref: 20701

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Ornithinibacillus

species: Ornithinibacillus halophilus

full scientific name: Ornithinibacillus halophilus Bagheri et al. 2013

strain designation: G8B

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30658positive12 µm0.55 µmrod-shapedyes
67771rod-shapedyes
67771positive

pigmentation

  • @ref: 30658
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20701
  • name: MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/434
  • composition: Name: MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434) Composition: NaCl 81.0 g/l Yeast extract 10.0 g/l MgSO4 x 7 H2O 9.6 g/l MgCl2 x 6 H2O 7.0 g/l Proteose peptone no. 3 5.0 g/l KCl 2.0 g/l Glucose 1.0 g/l CaCl2 0.36 g/l NaHCO3 0.06 g/l NaBr 0.026 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20701positivegrowth37mesophilic
30658positivegrowth20-55
30658positiveoptimum37.5mesophilic
67771positivegrowth35-40

culture pH

@refabilitytypepHPH range
30658positivegrowth6.5-8.5alkaliphile
30658positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30658aerobe
67771aerobe

spore formation

@refspore formationtype of spore
30658yes
67771yesendospore

halophily

  • @ref: 30658
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 6 %

murein

  • @ref: 20701
  • murein short key: A21.04
  • type: A4ß L-Orn-D-Asp

observation

  • @ref: 67771
  • observation: quinones: MK-7, MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3065816449alanine+carbon source
3065816634raffinose+carbon source

enzymes

  • @ref: 30658
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20701brineAran-Bidgol Salt LakeIranIRNAsia
67771From brineAran-Bidgol Salt LakeIranIRNAsia

isolation source categories

Cat1Cat2
#Environmental#Aquatic
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_1516.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_867;97_1015;98_1198;99_1516&stattab=map
  • Last taxonomy: Ornithinibacillus halophilus
  • 16S sequence: HQ433440
  • Sequence Identity:
  • Total samples: 39
  • soil counts: 16
  • aquatic counts: 13
  • animal counts: 9
  • plant counts: 1

Safety information

risk assessment

  • @ref: 20701
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20701
  • description: Ornithinibacillus halophilus strain G8B 16S ribosomal RNA gene, partial sequence
  • accession: HQ433440
  • length: 1487
  • database: ena
  • NCBI tax ID: 930117

GC content

@refGC-contentmethod
2070136.9high performance liquid chromatography (HPLC)
3065836.9

External links

@ref: 20701

culture collection no.: DSM 27695, IBRC-M 10683, KCTC 13822

straininfo link

  • @ref: 87776
  • straininfo: 405706

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22611200Ornithinibacillus halophilus sp. nov., a moderately halophilic, Gram-stain-positive, endospore-forming bacterium from a hypersaline lake.Bagheri M, Amoozegar MA, Schumann P, Didari M, Mehrshad M, Sproer C, Sanchez-Porro C, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.041350-02012Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Iran, Lakes/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Sodium Chloride, *Water MicrobiologyGenetics
Phylogeny29458475Ornithinibacillus salinisoli sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil.Gan L, Zhang H, Long X, Tian J, Wang Z, Zhang Y, Dai Y, Tian YInt J Syst Evol Microbiol10.1099/ijsem.0.0025802018Alkalies, Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny31184567Description of Ornithinibacillus gellani sp. nov., a halophilic bacterium isolated from lake sediment, and emended description of the genus Ornithinibacillus.Qu JH, Fu YH, Yue YF, Li HFInt J Syst Evol Microbiol10.1099/ijsem.0.0035002019Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20701Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27695Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27695)
30658Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172698928776041
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87776Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405706.1