Strain identifier

BacDive ID: 23735

Type strain: Yes

Species: Marinococcus tarijensis

Strain Designation: SR-1

Strain history: <- CECT <- D. Guzmán, Universidad Mayor de San Simón, Cochabamba, Bolivia

NCBI tax ID(s): 1156576 (species)

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General

@ref: 20643

BacDive-ID: 23735

DSM-Number: 28023

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, motile, coccus-shaped, colony-forming

description: Marinococcus tarijensis SR-1 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from salt mine.

NCBI tax id

  • NCBI tax id: 1156576
  • Matching level: species

strain history

  • @ref: 20643
  • history: <- CECT <- D. Guzmán, Universidad Mayor de San Simón, Cochabamba, Bolivia

doi: 10.13145/bacdive23735.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Marinococcus
  • species: Marinococcus tarijensis
  • full scientific name: Marinococcus tarijensis Balderrama-Subieta et al. 2013

@ref: 20643

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Marinococcus

species: Marinococcus tarijensis

full scientific name: Marinococcus tarijensis Balderrama-Subieta et al. 2013

strain designation: SR-1

type strain: yes

Morphology

cell morphology

  • @ref: 23008
  • gram stain: positive
  • cell length: 0.9-1.5 µm
  • cell shape: coccus-shaped
  • motility: yes

colony morphology

  • @ref: 23008
  • colony shape: circular
  • incubation period: 14 days
  • medium used: TSA medium

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
23008trypticase soy agaryes
20643BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20643positivegrowth28mesophilic
23008positivegrowth10.0-50.0
23008positiveoptimum37.0-40.0

culture pH

@refabilitytypepH
23008positivegrowth7.0-8.3
23008positiveoptimum7.6

Physiology and metabolism

oxygen tolerance

  • @ref: 23008
  • oxygen tolerance: aerobe

spore formation

  • @ref: 23008
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentrationhalophily level
23008NaClpositivegrowth3.0-20.0 %(w/v)
23008NaCloptimum5.0 %(w/v)
23008halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2300829985L-glutamate-builds acid from
2300817992sucrose-builds acid from
2300837166xylan-builds acid from
2300817234glucose-fermentation
23008casein-hydrolysis
230084853esculin-hydrolysis
2300828017starch-hydrolysis
2300853424tween 20-hydrolysis
2300853426tween 80-hydrolysis
2300816199urea-hydrolysis
2300851850methyl pyruvate-oxidation
2300841865sebacic acid-oxidation
2300817632nitrate-reduction
2300817057cellobiose+builds acid from
2300815824D-fructose+builds acid from
2300812936D-galactose+builds acid from
2300817634D-glucose+builds acid from
2300817924D-sorbitol+builds acid from
2300865327D-xylose+builds acid from
2300817754glycerol+builds acid from
2300815428glycine+builds acid from
2300830849L-arabinose+builds acid from
2300818050L-glutamine+builds acid from
2300817716lactose+builds acid from
2300817306maltose+builds acid from
2300829864mannitol+builds acid from
2300828017starch+builds acid from
2300827082trehalose+builds acid from
2300817924D-sorbitol+carbon source
2300817196L-asparagine+carbon source
2300815971L-histidine+carbon source
2300862345L-rhamnose+carbon source
23008645522-hydroxybutyrate+oxidation
23008286442-oxopentanoate+oxidation
2300830089acetate+oxidation
2300836219alpha-lactose+oxidation
2300816383cis-aconitate+oxidation
2300816947citrate+oxidation
2300815570D-alanine+oxidation
2300815895D-galactonic acid lactone+oxidation
2300812936D-galactose+oxidation
2300830612D-glucarate+oxidation
2300817784D-glucosaminic acid+oxidation
2300817634D-glucose+oxidation
2300814314D-glucose 6-phosphate+oxidation
2300827605D-psicose+oxidation
2300817924D-sorbitol+oxidation
2300832323glucuronamide+oxidation
2300814336glycerol 1-phosphate+oxidation
2300817596inosine+oxidation
2300821217L-alaninamide+oxidation
2300816977L-alanine+oxidation
2300873786L-alanylglycine+oxidation
2300817196L-asparagine+oxidation
2300829991L-aspartate+oxidation
2300829985L-glutamate+oxidation
2300815971L-histidine+oxidation
2300817203L-proline+oxidation
2300862345L-rhamnose+oxidation
2300817115L-serine+oxidation
2300828053melibiose+oxidation
23008320055methyl beta-D-glucopyranoside+oxidation
2300875146monomethyl succinate+oxidation
2300873784glycyl-l-glutamate+oxidation
2300816634raffinose+oxidation
23008143136succinamate+oxidation
2300830031succinate+oxidation
2300817992sucrose+oxidation
2300832528turanose+oxidation
2300853423tween 40+oxidation
2300853426tween 80+oxidation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistantresistance conc.sensitivity conc.group ID
230086104kanamycinyesnoyes30 µg
23008100147nalidixic acidyesnoyes30 µg
230087507neomycinyesnoyes30 µg
2300827902tetracyclineyesnoyes30 µg
230082766aphidicolinyesnoyes25 µg/mL
23008338412(-)-anisomycinyesnoyes50 µg/mL
230087660nystatinyesnoyes50 µg/mL
2300863618pravastatinyesnoyes50 µg/mL
230089150simvastatinyesnoyes50 µg/mL
2300828669bacitracinyesyes10 Unit
2300818208penicillin gyesyes10 Unit
230088309polymyxin byesyes300 Unit
2300828971ampicillinyesyes10 µg
2300843968meropenemyesyes10 µg
230083393carbenicillinyesyes100 µg
230088232piperacillinyesyes110 µg17
2300817833gentamicinyesyes120 µg
2300848923erythromycinyesyes15 µg
230083745clindamycinyesyes2 µg
23008102484sulfisoxazoleyesyes250 µg
23008161680aztreonamyesyes30 µg
23008209807cefoxitinyesyes30 µg
230083542cephalothinyesyes30 µg
2300817698chloramphenicolyesyes30 µg
2300863607linezolidyesyes30 µg
2300828368novobiocinyesyes30 µg
2300828001vancomycinyesyes30 µg
2300817076streptomycinyesyes300 µg
2300828077rifampicinyesyes5 µg
230089421tazobactamyesyes110 µg17

metabolite production

@refChebi-IDmetaboliteproduction
2300853388polyhydroxybutyrateno
2300872813exopolysaccharideno
2300815688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
2300815688acetoin-
2300817234glucose-

enzymes

  • @ref: 23008
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
20643salt mineTarijaBoliviaBOLMiddle and South America
23008salt crystal from a salt mineTarijaBoliviaBOLMiddle and South America-21.4669-64.1839modified HM mediumcontaining (%, w/v): NaCl, 17.8; MgSO4.7H2O, 0.1; CaCl2.2H2O, 0.036; KCl, 0.2; NaHCO3 , 0.006; NaBr,0.023; peptone, 0.5; yeast extract, 1.0; glucose, 0.1. pH was adjusted to 7.5 by using 3 M NaOH.7 days30

isolation source categories

Cat1Cat2Cat3
#Engineered#Other#Mine
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_6855.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_605;96_3225;97_3957;98_5046;99_6855&stattab=map
  • Last taxonomy: Marinococcus
  • 16S sequence: JQ413413
  • Sequence Identity:
  • Total samples: 2817
  • soil counts: 176
  • aquatic counts: 1141
  • animal counts: 1431
  • plant counts: 69

Safety information

risk assessment

  • @ref: 20643
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20643
  • description: Marinococcus tarijensis strain SR-1 16S ribosomal RNA gene, partial sequence
  • accession: JQ413413
  • length: 1495
  • database: ena
  • NCBI tax ID: 1156576

GC content

  • @ref: 20643
  • GC-content: 48.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 20643

culture collection no.: DSM 28023, CECT 8130, LMG 26930

straininfo link

  • @ref: 87772
  • straininfo: 379675

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23504966Marinococcus tarijensis sp. nov., a moderately halophilic bacterium isolated from a salt mine.Balderrama-Subieta A, Guzman D, Minegishi H, Echigo A, Shimane Y, Hatada Y, Quillaguaman JInt J Syst Evol Microbiol10.1099/ijs.0.045401-02013Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bolivia, DNA, Bacterial/genetics, Fatty Acids/analysis, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny27349661Marinococcus salis sp., nov., a moderately halophilic bacterium isolated from a salt marsh.Vishnuvardhan Reddy S, Thirumala M, Farooq M, Sasikala C, Venkata Ramana CArch Microbiol10.1007/s00203-016-1263-z2016Bacillaceae/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, India, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/analysis, WetlandsTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20643Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28023Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28023)
23008Andrea Balderrama-Subieta,Daniel Guzmán,Hiroaki Minegishi,Akinobu Echigo,Yasuhiro Shimane,Yuji Hatada,Jorge QuillaguamMarinococcus tarijensis sp. nov., a moderately halophilic bacterium isolated from a salt mine10.1099/ijs.0.045401-0IJSEM 63: 3319-3323 201323504966
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87772Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID379675.1