Strain identifier

BacDive ID: 23717

Type strain: Yes

Species: Bacillus tianshenii

Strain history: <- S.-K. Tang, YIM; YIM M13235 <- D.-F. Zhang

NCBI tax ID(s): 1463404 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 20445

BacDive-ID: 23717

DSM-Number: 25879

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile

description: Bacillus tianshenii DSM 25879 is a spore-forming, mesophilic, motile bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1463404
  • Matching level: species

strain history

  • @ref: 20445
  • history: <- S.-K. Tang, YIM; YIM M13235 <- D.-F. Zhang

doi: 10.13145/bacdive23717.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus tianshenii
  • full scientific name: Bacillus tianshenii Jiang et al. 2014
  • synonyms

    • @ref: 20215
    • synonym: Sutcliffiella tianshenii

@ref: 20445

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus tianshenii

full scientific name: Bacillus tianshenii Jiang et al. 2014

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes96.569
69480100positive

Culture and growth conditions

culture medium

  • @ref: 20445
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 20445
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

  • @ref: 20445
  • sample type: marine sediment
  • geographic location: South China Sea (117° 37.208' E 21° 23.202' N) at a depth of 652 m
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 21.3867
  • longitude: 117.62

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_25779.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_567;97_659;98_762;99_25779&stattab=map
  • Last taxonomy: Bacillus
  • 16S sequence: KF811034
  • Sequence Identity:
  • Total samples: 601
  • soil counts: 240
  • aquatic counts: 230
  • animal counts: 118
  • plant counts: 13

Safety information

risk assessment

  • @ref: 20445
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20445
  • description: Bacillus tianshenii strain YIM M13235 16S ribosomal RNA gene, partial sequence
  • accession: KF811034
  • length: 1571
  • database: ena
  • NCBI tax ID: 1463404

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus tianshenii DSM 25879GCA_016908565contigncbi1463404
66792Bacillus tianshenii strain DSM 258791463404.3wgspatric1463404
66792Bacillus tianshenii DSM 258792901159319draftimg1463404

GC content

  • @ref: 20445
  • GC-content: 42.1
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes88.473no
gram-positiveyes87.257no
anaerobicno97.568no
aerobicyes88.057no
halophileyes57.271no
spore-formingyes95.558no
thermophileno97.636yes
glucose-utilyes88.092no
flagellatedyes85.045no
glucose-fermentno95.008no

External links

@ref: 20445

culture collection no.: DSM 25879, KCTC 33044, YIM M13235

straininfo link

  • @ref: 87763
  • straininfo: 402456

literature

  • topic: Phylogeny
  • Pubmed-ID: 24614848
  • title: Bacillus tianshenii sp. nov., isolated from a marine sediment sample.
  • authors: Jiang Z, Zhang DF, Khieu TN, Son CK, Zhang XM, Cheng J, Tian XP, Zhang S, Li WJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.062224-0
  • year: 2014
  • mesh: Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20445Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25879Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25879)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87763Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402456.1