Strain identifier
BacDive ID: 23717
Type strain:
Species: Bacillus tianshenii
Strain history: <- S.-K. Tang, YIM; YIM M13235 <- D.-F. Zhang
NCBI tax ID(s): 1463404 (species)
version 8.1 (current version)
General
@ref: 20445
BacDive-ID: 23717
DSM-Number: 25879
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Bacillus tianshenii DSM 25879 is a spore-forming, mesophilic, motile bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1463404
- Matching level: species
strain history
- @ref: 20445
- history: <- S.-K. Tang, YIM; YIM M13235 <- D.-F. Zhang
doi: 10.13145/bacdive23717.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus tianshenii
- full scientific name: Bacillus tianshenii Jiang et al. 2014
synonyms
- @ref: 20215
- synonym: Sutcliffiella tianshenii
@ref: 20445
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus tianshenii
full scientific name: Bacillus tianshenii Jiang et al. 2014
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 96.569 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 20445
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 20445
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 20445
- sample type: marine sediment
- geographic location: South China Sea (117° 37.208' E 21° 23.202' N) at a depth of 652 m
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 21.3867
- longitude: 117.62
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_25779.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_567;97_659;98_762;99_25779&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: KF811034
- Sequence Identity:
- Total samples: 601
- soil counts: 240
- aquatic counts: 230
- animal counts: 118
- plant counts: 13
Safety information
risk assessment
- @ref: 20445
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20445
- description: Bacillus tianshenii strain YIM M13235 16S ribosomal RNA gene, partial sequence
- accession: KF811034
- length: 1571
- database: ena
- NCBI tax ID: 1463404
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bacillus tianshenii DSM 25879 | GCA_016908565 | contig | ncbi | 1463404 |
66792 | Bacillus tianshenii strain DSM 25879 | 1463404.3 | wgs | patric | 1463404 |
66792 | Bacillus tianshenii DSM 25879 | 2901159319 | draft | img | 1463404 |
GC content
- @ref: 20445
- GC-content: 42.1
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 88.473 | no |
gram-positive | yes | 87.257 | no |
anaerobic | no | 97.568 | no |
aerobic | yes | 88.057 | no |
halophile | yes | 57.271 | no |
spore-forming | yes | 95.558 | no |
thermophile | no | 97.636 | yes |
glucose-util | yes | 88.092 | no |
flagellated | yes | 85.045 | no |
glucose-ferment | no | 95.008 | no |
External links
@ref: 20445
culture collection no.: DSM 25879, KCTC 33044, YIM M13235
straininfo link
- @ref: 87763
- straininfo: 402456
literature
- topic: Phylogeny
- Pubmed-ID: 24614848
- title: Bacillus tianshenii sp. nov., isolated from a marine sediment sample.
- authors: Jiang Z, Zhang DF, Khieu TN, Son CK, Zhang XM, Cheng J, Tian XP, Zhang S, Li WJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.062224-0
- year: 2014
- mesh: Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20445 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25879 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25879) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
87763 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402456.1 |