Strain identifier
BacDive ID: 23664
Type strain: 
Species: Bacillus massilioanorexius
Strain Designation: AP8
Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; AP8 <- A. Pfleiderer
NCBI tax ID(s): 83428 (species)
version 9.3 (current version)
General
@ref: 20403
BacDive-ID: 23664
DSM-Number: 26092
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Bacillus massilioanorexius AP8 is a spore-forming, mesophilic bacterium that was isolated from human feces.
NCBI tax id
- NCBI tax id: 83428
- Matching level: species
strain history
- @ref: 20403
- history: <- J.-C. Lagier, Timone Hospital, Marseille, France; AP8 <- A. Pfleiderer
doi: 10.13145/bacdive23664.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus massilioanorexius
- full scientific name: Bacillus massilioanorexius Mishra et al. 2013
@ref: 20403
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
strain designation: AP8
type strain: no
Culture and growth conditions
culture medium
- @ref: 20403
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 20403
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 91.4
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | yes | 92.522 |
| 125439 | yes | 92.5 |
Isolation, sampling and environmental information
isolation
- @ref: 20403
- sample type: human feces
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_41697.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1256;97_1490;98_4360;99_41697&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: JX101689
- Sequence Identity:
- Total samples: 94
- soil counts: 31
- aquatic counts: 6
- animal counts: 53
- plant counts: 4
Sequence information
16S sequences
- @ref: 20403
- description: Bacillus sp. AP8 16S ribosomal RNA gene, partial sequence
- accession: JX101689
- length: 1514
- database: nuccore
- NCBI tax ID: 1211814
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus sp. AP8 | GCA_000321185 | contig | ncbi | 1513284 |
| 66792 | Bacillus sp. AP8 | 1211814.3 | wgs | patric | 1211814 |
GC content
- @ref: 20403
- GC-content: 34.1
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 91.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 70.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 83.3 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 92.5 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 74.05 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 88.535 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.522 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 55.487 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 93.404 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 79.947 | no |
External links
@ref: 20403
culture collection no.: DSM 26092, CSUR P201
straininfo link
- @ref: 87724
- straininfo: 402904
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20403 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26092 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26092) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 87724 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402904.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |