Strain identifier
BacDive ID: 2366
Type strain:
Species: Cellulomonas iranensis
Strain Designation: O
Strain history: CIP <- 2002, ATCC <- M. Shahamat <- F. Malekzadeh
NCBI tax ID(s): 1223509 (strain), 76862 (species)
General
@ref: 5539
BacDive-ID: 2366
DSM-Number: 14785
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive
description: Cellulomonas iranensis O is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from forest soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
76862 | species |
1223509 | strain |
strain history
@ref | history |
---|---|
5539 | <- IFO <- ATCC <- M. Shahamat; O |
67770 | CIP 107678 <-- ATCC 700643 <-- M. Shahamat and F. Malekzadeh strain O. |
120280 | CIP <- 2002, ATCC <- M. Shahamat <- F. Malekzadeh |
doi: 10.13145/bacdive2366.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Cellulomonadaceae
- genus: Cellulomonas
- species: Cellulomonas iranensis
- full scientific name: Cellulomonas iranensis Elberson et al. 2000
@ref: 5539
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Cellulomonadaceae
genus: Cellulomonas
species: Cellulomonas iranensis
full scientific name: Cellulomonas iranensis Elberson et al. 2000
strain designation: O
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | positive | 100 | ||
120280 | positive | rod-shaped | yes |
colony morphology
- @ref: 120280
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5539 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
39921 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
120280 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5539 | positive | growth | 28 | mesophilic |
39921 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
120280 | positive | growth | 15-45 | |
120280 | no | growth | 10 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 120280
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.908
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
120280 | NaCl | positive | growth | 0-6 % |
120280 | NaCl | no | growth | 8 % |
120280 | NaCl | no | growth | 10 % |
murein
- @ref: 5539
- murein short key: A21.04
- type: A4ß L-Orn-D-Asp
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | + | builds acid from | 28087 |
68371 | starch | + | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | + | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | erythritol | - | builds acid from | 17113 |
120280 | citrate | - | carbon source | 16947 |
120280 | esculin | + | hydrolysis | 4853 |
120280 | hippurate | + | hydrolysis | 606565 |
120280 | nitrate | - | reduction | 17632 |
120280 | nitrite | - | reduction | 16301 |
120280 | nitrate | + | respiration | 17632 |
antibiotic resistance
- @ref: 120280
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
- @ref: 120280
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
120280 | 15688 | acetoin | - | |
120280 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
120280 | oxidase | + | |
120280 | beta-galactosidase | + | 3.2.1.23 |
120280 | alcohol dehydrogenase | - | 1.1.1.1 |
120280 | gelatinase | +/- | |
120280 | amylase | + | |
120280 | DNase | + | |
120280 | caseinase | + | 3.4.21.50 |
120280 | catalase | + | 1.11.1.6 |
120280 | cellulase | - | 3.2.1.4 |
120280 | tween esterase | + | |
120280 | gamma-glutamyltransferase | - | 2.3.2.2 |
120280 | lecithinase | - | |
120280 | lipase | - | |
120280 | lysine decarboxylase | - | 4.1.1.18 |
120280 | ornithine decarboxylase | - | 4.1.1.17 |
120280 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
120280 | tryptophan deaminase | - | |
120280 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120280 | - | - | + | + | - | + | - | - | - | - | - | + | + | + | - | + | + | + | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120280 | +/- | - | +/- | + | - | + | - | - | + | + | + | + | +/- | - | - | - | - | +/- | - | - | - | - | - | + | + | + | + | +/- | +/- | - | + | +/- | - | - | - | + | + | - | +/- | +/- | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120280 | + | + | + | + | - | - | - | + | - | + | + | + | + | - | - | + | + | - | + | - | + | + | + | - | - | - | - | - | - | - | - | + | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
5539 | forest soil | Iran, near the Caspian Sea | Iran | IRN | Asia | |
67770 | Forest humus soil | Ramsar | Iran | IRN | Asia | |
120280 | Environment, Humus soil, Ramsar forest | Iran | IRN | Asia | 1992 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Forest |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_3003.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_432;97_1685;98_2313;99_3003&stattab=map
- Last taxonomy: Cellulomonas
- 16S sequence: AB695190
- Sequence Identity:
- Total samples: 1253
- soil counts: 334
- aquatic counts: 224
- animal counts: 635
- plant counts: 60
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
5539 | 1 | Risk group (German classification) |
120280 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
5539 | Cellulomonas iranensis strain O 16S ribosomal RNA gene, partial sequence | AF064702 | 1378 | ena | 76862 |
67770 | Cellulomonas iranensis gene for 16S rRNA, partial sequence, strain: JCM 18110 | AB695190 | 1459 | ena | 76862 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Cellulomonas iranensis NBRC 101100 = JCM 18110 | GCA_001315225 | contig | ncbi | 1223509 |
66792 | Cellulomonas iranensis NBRC 101100 = JCM 18110 | 1223509.4 | wgs | patric | 1223509 |
66792 | Cellulomonas iranensis NBRC 101100 = JCM 18110 | 1223509.5 | wgs | patric | 1223509 |
66792 | Cellulomonas iranensis DSM 14785 | 2927609659 | draft | img | 76862 |
66792 | Cellulomonas iranensis NBRC 101100 | 2731957583 | draft | img | 1223509 |
66792 | Cellulomonas iranensis JCM 18110 | 2734481977 | draft | img | 1223509 |
67770 | Cellulomonas iranensis NBRC 101100 = JCM 18110 NBRC 101100 | GCA_001552375 | contig | ncbi | 1223509 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 72 | no |
motile | no | 83.949 | no |
gram-positive | yes | 64.706 | no |
anaerobic | no | 94.956 | no |
aerobic | yes | 61.747 | no |
halophile | no | 73.006 | no |
spore-forming | no | 94.052 | no |
thermophile | no | 96.837 | no |
glucose-util | yes | 85.218 | no |
flagellated | no | 92.71 | no |
glucose-ferment | yes | 69.366 | no |
External links
@ref: 5539
culture collection no.: DSM 14785, ATCC 700643, IFO 16734, NBRC 16734, JCM 18110, CIP 107678, JCM 12410, KCTC 9983, NBRC 101100
straininfo link
- @ref: 71921
- straininfo: 45441
literature
- topic: Phylogeny
- Pubmed-ID: 32038002
- title: Cellulomonas shaoxiangyii sp. nov., isolated from faeces of Tibetan antelope (Pantholops hodgsonii) on the Qinghai-Tibet Plateau.
- authors: Tian Z, Lu S, Jin D, Yang J, Pu J, Lai XH, Ren ZH, Wu XM, Li J, Wang S, Xu J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003939
- year: 2020
- mesh: Animals, Antelopes/*microbiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cellulomonas/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Nucleic Acid Hybridization, Ornithine/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
5539 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14785) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14785 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
39921 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5140 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
71921 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45441.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
120280 | Curators of the CIP | Collection of Institut Pasteur (CIP 107678) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107678 |