Strain identifier

BacDive ID: 2365

Type strain: Yes

Species: Cellulomonas persica

Strain Designation: I

Strain history: CIP <- 2002, ATCC <- M. Shahamat <- F. Malekzadeh

NCBI tax ID(s): 1305867 (strain), 76861 (species)

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General

@ref: 5538

BacDive-ID: 2365

DSM-Number: 14784

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive

description: Cellulomonas persica I is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from forest soil.

NCBI tax id

NCBI tax idMatching level
76861species
1305867strain

strain history

@refhistory
5538<- IFO <- ATCC <- M. Shahamat; I
67770CIP 107677 <-- ATCC 700642 <-- M. Shahamat and F. Malekzadeh strain I.
121686CIP <- 2002, ATCC <- M. Shahamat <- F. Malekzadeh

doi: 10.13145/bacdive2365.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Cellulomonadaceae
  • genus: Cellulomonas
  • species: Cellulomonas persica
  • full scientific name: Cellulomonas persica Elberson et al. 2000

@ref: 5538

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Cellulomonadaceae

genus: Cellulomonas

species: Cellulomonas persica

full scientific name: Cellulomonas persica Elberson et al. 2000

strain designation: I

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
121686positiverod-shapedyes

colony morphology

  • @ref: 121686

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5538TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
39920MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121686CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
5538positivegrowth28mesophilic
39920positivegrowth30mesophilic
67770positivegrowth28mesophilic
121686positivegrowth15-45
121686nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 121686
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.931

halophily

@refsaltgrowthtested relationconcentration
121686NaClpositivegrowth0-4 %
121686NaClnogrowth6 %
121686NaClnogrowth8 %
121686NaClnogrowth10 %

murein

  • @ref: 5538
  • murein short key: A21.04
  • type: A4ß L-Orn-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371cellobiose+builds acid from17057
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
121686citrate-carbon source16947
121686esculin+hydrolysis4853
121686hippurate-hydrolysis606565
121686nitrate+reduction17632
121686nitrite-reduction16301
121686nitrate+respiration17632

antibiotic resistance

  • @ref: 121686
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 121686
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12168615688acetoin-
12168617234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
121686oxidase+
121686beta-galactosidase+3.2.1.23
121686alcohol dehydrogenase-1.1.1.1
121686gelatinase+/-
121686amylase+
121686DNase+
121686caseinase-3.4.21.50
121686catalase+1.11.1.6
121686cellulase-3.2.1.4
121686tween esterase+
121686gamma-glutamyltransferase-2.3.2.2
121686lecithinase-
121686lipase-
121686lysine decarboxylase-4.1.1.18
121686ornithine decarboxylase-4.1.1.17
121686phenylalanine ammonia-lyase-4.3.1.24
121686tryptophan deaminase-
121686urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121686--++-+---+-+++-+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121686---+-+---++------------+/-+/-+/-++/----+/----++---+/---------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121686++++---+-+++---++-+-+++--------+---+--------------------------------------------------+------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
5538forest soilIran, near the Caspian SeaIranIRNAsia
67770Forest humus soilRamsarIranIRNAsia
121686Environment, Humus soil, Ramsar forestIranIRNAsia1992

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_8197.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_432;97_4150;98_5311;99_8197&stattab=map
  • Last taxonomy: Cellulomonas
  • 16S sequence: AB695191
  • Sequence Identity:
  • Total samples: 236
  • soil counts: 127
  • aquatic counts: 39
  • animal counts: 57
  • plant counts: 13

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
55381Risk group (German classification)
1216861Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
5538Cellulomonas persica strain I 16S ribosomal RNA gene, partial sequenceAF0647011379ena76861
67770Cellulomonas persica gene for 16S rRNA, partial sequence, strain: JCM 18111AB6951911457ena76861

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cellulomonas persica JCM 18111GCA_001315245contigncbi1305867
66792Cellulomonas persica JCM 181111305867.3wgspatric1305867
66792Cellulomonas persica strain NBRC 10110176861.4wgspatric76861
66792Cellulomonas persica JCM 181112734481978draftimg1305867
67770Cellulomonas persica NBRC 101101GCA_007989825contigncbi76861

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes79no
motileno81.828no
gram-positiveyes78.709no
anaerobicno93.649no
halophileno83.124no
spore-formingno95.576no
thermophileno97.432yes
glucose-utilyes85.498no
aerobicyes67.664no
flagellatedno96.061no
glucose-fermentyes63.833no

External links

@ref: 5538

culture collection no.: DSM 14784, ATCC 700642, IFO 16733, NBRC 16733, JCM 18111, CIP 107677, JCM 12411, KCTC 9984, NBRC 101101

straininfo link

  • @ref: 71920
  • straininfo: 44052

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny32877326Cellulomonas citrea sp. nov., isolated from paddy soil.Lee HJ, Kim SY, Whang KSInt J Syst Evol Microbiol10.1099/ijsem.0.0044092020Bacterial Typing Techniques, Base Composition, Cellulomonas/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Oryza, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny35100105Cellulomonas fulva sp. nov., isolated from oil-contaminated soil.Dahal RH, Kim J, Kim DU, Dong K, Hong Y, Chaudhary DKInt J Syst Evol Microbiol10.1099/ijsem.0.0052092022Bacterial Typing Techniques, Base Composition, *Cellulomonas/classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil PollutantsTranscriptome

Reference

@idauthorscataloguedoi/urltitle
5538Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14784)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14784
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39920Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5139
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
71920Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44052.1StrainInfo: A central database for resolving microbial strain identifiers
121686Curators of the CIPCollection of Institut Pasteur (CIP 107677)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107677