Strain identifier
BacDive ID: 23586
Type strain: 
Species: Anoxybacillus calidus
Strain Designation: C161ab
Strain history: <- A. Coleri Cihan, Ankara Univ., Turkey; C161ab
NCBI tax ID(s): 575178 (species)
version 8.1 (current version)
General
@ref: 20308
BacDive-ID: 23586
DSM-Number: 25220
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic, motile
description: Anoxybacillus calidus C161ab is a spore-forming, thermophilic, motile bacterium that was isolated from soil collected near a high temperature well pipeline.
NCBI tax id
- NCBI tax id: 575178
- Matching level: species
strain history
- @ref: 20308
- history: <- A. Coleri Cihan, Ankara Univ., Turkey; C161ab
doi: 10.13145/bacdive23586.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Anoxybacillus
- species: Anoxybacillus calidus
- full scientific name: Anoxybacillus calidus Cihan et al. 2014
@ref: 20308
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Anoxybacillus
species: Anoxybacillus calidus
full scientific name: Anoxybacillus calidus Cihan et al. 2014
strain designation: C161ab
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 94.499 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 20308
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 20308 | positive | growth | 55 | thermophilic | |
| 69480 | thermophilic | 98.7 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 20308
- sample type: soil collected near a high temperature well pipeline
- geographic location: Denizli province, Kizildere, Saraykoy-Buharkent thermal power plant (37° 46' N 29°06' E)
- country: Turkey
- origin.country: TUR
- continent: Asia
- latitude: 37.7667
- longitude: 29.15
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Engineered product |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_121878.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_1044;97_40351;98_82014;99_121878&stattab=map
- Last taxonomy: Anoxybacillus calidus
- 16S sequence: FJ430012
- Sequence Identity:
- Total samples: 312
- soil counts: 150
- aquatic counts: 79
- animal counts: 33
- plant counts: 50
Safety information
risk assessment
- @ref: 20308
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20308
- description: Anoxybacillus calidus strain C161ab 16S ribosomal RNA gene, partial sequence
- accession: FJ430012
- length: 1446
- database: ena
- NCBI tax ID: 575178
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anoxybacillus calidus DSM 25220 | GCA_013760845 | scaffold | ncbi | 575178 |
| 66792 | Anoxybacillus calidus strain DSM 25220 | 575178.3 | wgs | patric | 575178 |
| 66792 | Anoxybacillus calidus DSM 25220 | 2861223213 | draft | img | 575178 |
GC content
- @ref: 20308
- GC-content: 37.8
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 85.252 | no |
| flagellated | yes | 80.122 | no |
| gram-positive | yes | 88.906 | no |
| anaerobic | no | 97.477 | no |
| aerobic | yes | 87.122 | no |
| halophile | no | 86.003 | no |
| spore-forming | yes | 96.771 | no |
| thermophile | yes | 99.31 | yes |
| glucose-util | yes | 91.283 | no |
| glucose-ferment | no | 91.894 | no |
External links
@ref: 20308
culture collection no.: DSM 25220, NCIMB 14851
straininfo link
- @ref: 87678
- straininfo: 397208
literature
- topic: Phylogeny
- Pubmed-ID: 24052627
- title: Anoxybacillus calidus sp. nov., a thermophilic bacterium isolated from soil near a thermal power plant.
- authors: Cihan AC, Cokmus C, Koc M, Ozcan B
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.056549-0
- year: 2013
- mesh: Anoxybacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, *Power Plants, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkey, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20308 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25220 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25220) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 87678 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397208.1 |