Strain identifier
BacDive ID: 23585
Type strain: 
Species: Alkalibacillus almallahensis
Strain Designation: S1LM8
Strain history: <- M. Monteoliva-Sánchez, Univ. Granada, Campus Cartuja, Fac. Pharmacy, Spain; S1LM8 <- A. Perez-Davo
NCBI tax ID(s): 1379154 (species)
version 8.1 (current version)
General
@ref: 20278
BacDive-ID: 23585
DSM-Number: 27545
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Alkalibacillus almallahensis S1LM8 is a spore-forming, mesophilic, motile bacterium that was isolated from sediment from an inland solar saltern.
NCBI tax id
- NCBI tax id: 1379154
- Matching level: species
strain history
- @ref: 20278
- history: <- M. Monteoliva-Sánchez, Univ. Granada, Campus Cartuja, Fac. Pharmacy, Spain; S1LM8 <- A. Perez-Davo
doi: 10.13145/bacdive23585.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Alkalibacillus
- species: Alkalibacillus almallahensis
- full scientific name: Alkalibacillus almallahensis Pérez-Davó et al. 2014
@ref: 20278
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Alkalibacillus
species: Alkalibacillus almallahensis
full scientific name: Alkalibacillus almallahensis Pérez-Davó et al. 2014
strain designation: S1LM8
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 93.562 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 20278
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 80.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 20278
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 99.645
Isolation, sampling and environmental information
isolation
- @ref: 20278
- sample type: sediment from an inland solar saltern
- geographic location: Andalusia, Granada, La Malahá (37° 6' 5'' N 3° 43' 21'' W)
- country: Spain
- origin.country: ESP
- continent: Europe
- latitude: 37.1014
- longitude: -3.7225
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Sediment |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_30769.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_15055;97_18382;98_22890;99_30769&stattab=map
- Last taxonomy: Alkalibacillus
- 16S sequence: KC968225
- Sequence Identity:
- Total samples: 703
- soil counts: 176
- aquatic counts: 219
- animal counts: 274
- plant counts: 34
Safety information
risk assessment
- @ref: 20278
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20278
- description: Alkalibacillus almallahensis strain S1LM8 16S ribosomal RNA gene, partial sequence
- accession: KC968225
- length: 1511
- database: ena
- NCBI tax ID: 1379154
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Alkalibacillus almallahensis CECT 8373 | GCA_011761495 | scaffold | ncbi | 1379154 |
| 66792 | Alkalibacillus almallahensis strain CECT 8373 | 1379154.3 | wgs | patric | 1379154 |
| 66792 | Alkalibacillus almallahensis CECT 8373 | 2824469054 | draft | img | 1379154 |
GC content
- @ref: 20278
- GC-content: 38.2
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 56 | no |
| motile | yes | 90.78 | no |
| flagellated | yes | 66.134 | no |
| gram-positive | yes | 92.31 | no |
| anaerobic | no | 97.798 | no |
| aerobic | yes | 91.125 | no |
| halophile | yes | 96.697 | no |
| spore-forming | yes | 90.69 | no |
| glucose-util | yes | 89.638 | no |
| thermophile | no | 96.888 | no |
| glucose-ferment | no | 86.024 | no |
External links
@ref: 20278
culture collection no.: DSM 27545, CECT 8373
straininfo link
- @ref: 87677
- straininfo: 394284
literature
- topic: Phylogeny
- Pubmed-ID: 24670895
- title: Alkalibacillus almallahensis sp. nov., a halophilic bacterium isolated from an inland solar saltern.
- authors: Perez-Davo A, Aguilera M, Ramos-Cormenzana A, Monteoliva-Sanchez M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.059121-0
- year: 2014
- mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Sodium Chloride, Spain, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20278 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27545 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27545) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 87677 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID394284.1 |