Strain identifier
BacDive ID: 23584
Type strain: 
Species: Aureimonas phyllosphaerae
Strain Designation: L9-753
Strain history: <- M. Munusamy, National University of Singapore, Temasek Life Scs. Lab.; L9-753
NCBI tax ID(s): 1166078 (species)
version 8.1 (current version)
General
@ref: 21227
BacDive-ID: 23584
DSM-Number: 25026
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Aureimonas phyllosphaerae L9-753 is a mesophilic, Gram-negative bacterium that was isolated from surface-sterilized leaf tissues of Jatropha curcas L..
NCBI tax id
- NCBI tax id: 1166078
- Matching level: species
strain history
- @ref: 21227
- history: <- M. Munusamy, National University of Singapore, Temasek Life Scs. Lab.; L9-753
doi: 10.13145/bacdive23584.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Aurantimonadaceae
- genus: Aureimonas
- species: Aureimonas phyllosphaerae
- full scientific name: Aureimonas phyllosphaerae Madhaiyan et al. 2013
@ref: 21227
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Aurantimonadaceae
genus: Aureimonas
species: Aureimonas phyllosphaerae
full scientific name: Aureimonas phyllosphaerae Madhaiyan et al. 2013
strain designation: L9-753
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.952
colony morphology
- @ref: 21227
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 21227
- name: AURANTIMONAS MEDIUM (DSMZ Medium 1346)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1346
- composition: Name: AURANTIMONAS MEDIUM (DSMZ Medium 1346) Composition: Agar 20.0 g/l Tryptone 10.0 g/l NaCl 5.0 g/l Yeast extract 5.0 g/l D-Glucose 1.0 g/l CaCl2 x 2 H2O 0.345 g/l Distilled water
culture temp
- @ref: 21227
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.996 |
Isolation, sampling and environmental information
isolation
- @ref: 21227
- sample type: surface-sterilized leaf tissues of Jatropha curcas L.
- host species: Jatropha curcas
- geographic location: Lim Chu Kang, Agrotechnology Experimental Station
- country: Singapore
- origin.country: SGP
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
| #Host Body-Site | #Plant | #Sterilized plant part |
taxonmaps
- @ref: 69479
- File name: preview.99_3667.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_1582;97_1888;98_2804;99_3667&stattab=map
- Last taxonomy: Aureimonas phyllosphaerae subclade
- 16S sequence: JQ346806
- Sequence Identity:
- Total samples: 12394
- soil counts: 2491
- aquatic counts: 1215
- animal counts: 4285
- plant counts: 4403
Safety information
risk assessment
- @ref: 21227
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21227
- description: Aureimonas phyllosphaerae strain L9-753 16S ribosomal RNA gene, partial sequence
- accession: JQ346806
- length: 1444
- database: ena
- NCBI tax ID: 1166078
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aureimonas phyllosphaerae L9-753,KACC 16231,DSM 25026 | GCA_900113065 | contig | ncbi | 1166078 |
| 66792 | Aureimonas phyllosphaerae L9-753,KACC 16231,DSM 25026 | GCA_014196415 | scaffold | ncbi | 1166078 |
| 66792 | Aureimonas phyllosphaerae strain L9-753,KACC 16231,DSM 25026 | 1166078.4 | wgs | patric | 1166078 |
| 66792 | Aureimonas phyllosphaerae strain L9-753,KACC 16231,DSM 25026 | 1166078.6 | wgs | patric | 1166078 |
| 66792 | Aureimonas phyllosphaerae DSM 25026 | 2829885600 | draft | img | 1166078 |
| 66792 | Aureimonas phyllosphaerae L9-753 | 2654587881 | draft | img | 1166078 |
GC content
- @ref: 21227
- GC-content: 69.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 76.682 | no |
| gram-positive | no | 97.259 | no |
| anaerobic | no | 97.177 | no |
| aerobic | yes | 91.152 | no |
| halophile | no | 87.841 | no |
| spore-forming | no | 94.666 | no |
| glucose-util | yes | 91.126 | no |
| thermophile | no | 99.109 | no |
| motile | yes | 79.377 | no |
| glucose-ferment | no | 89.905 | no |
External links
@ref: 21227
culture collection no.: DSM 25026, KACC 16231
straininfo link
- @ref: 87676
- straininfo: 397930
literature
- topic: Phylogeny
- Pubmed-ID: 30663956
- title: Aureimonas flava sp. nov., a novel endophytic bacterium isolated from leaf of Acrostichum aureum.
- authors: Tuo L, Yan XR
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003252
- year: 2019
- mesh: Alphaproteobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ferns/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21227 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25026 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25026) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 87676 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397930.1 |