Strain identifier
BacDive ID: 23581
Type strain: 
Species: Aureimonas jatrophae
Strain Designation: L7-484
Strain history: <- M. Munusamy, National University of Singapore, Temasek Life Scs. Lab.; L7-484
NCBI tax ID(s): 1166073 (species)
version 8.1 (current version)
General
@ref: 21224
BacDive-ID: 23581
DSM-Number: 25025
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Aureimonas jatrophae L7-484 is a mesophilic, Gram-negative bacterium that was isolated from surface-sterilized leaf tissues of Jatropha curcas L..
NCBI tax id
- NCBI tax id: 1166073
- Matching level: species
strain history
- @ref: 21224
- history: <- M. Munusamy, National University of Singapore, Temasek Life Scs. Lab.; L7-484
doi: 10.13145/bacdive23581.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Aurantimonadaceae
- genus: Aureimonas
- species: Aureimonas jatrophae
- full scientific name: Aureimonas jatrophae Madhaiyan et al. 2013
@ref: 21224
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Aurantimonadaceae
genus: Aureimonas
species: Aureimonas jatrophae
full scientific name: Aureimonas jatrophae Madhaiyan et al. 2013
strain designation: L7-484
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.981
Culture and growth conditions
culture medium
- @ref: 21224
- name: AURANTIMONAS MEDIUM (DSMZ Medium 1346)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1346
- composition: Name: AURANTIMONAS MEDIUM (DSMZ Medium 1346) Composition: Agar 20.0 g/l Tryptone 10.0 g/l NaCl 5.0 g/l Yeast extract 5.0 g/l D-Glucose 1.0 g/l CaCl2 x 2 H2O 0.345 g/l Distilled water
culture temp
- @ref: 21224
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 98 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
- @ref: 21224
- sample type: surface-sterilized leaf tissues of Jatropha curcas L.
- host species: Jatropha curcas
- geographic location: Lim Chu Kang, Agrotechnology Experimental Station
- country: Singapore
- origin.country: SGP
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
| #Host Body-Site | #Plant | #Sterilized plant part |
taxonmaps
- @ref: 69479
- File name: preview.99_106763.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_1582;97_3859;98_4901;99_106763&stattab=map
- Last taxonomy: Aureimonas jatrophae subclade
- 16S sequence: JQ346805
- Sequence Identity:
- Total samples: 512
- soil counts: 31
- aquatic counts: 35
- animal counts: 259
- plant counts: 187
Safety information
risk assessment
- @ref: 21224
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21224
- description: Aureimonas jatrophae strain L7-484 16S ribosomal RNA gene, partial sequence
- accession: JQ346805
- length: 1442
- database: ena
- NCBI tax ID: 1166073
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aureimonas jatrophae L7-484,KACC 16230,DSM 25025 | GCA_014196395 | contig | ncbi | 1166073 |
| 66792 | Aureimonas jatrophae L7-484,KACC 16230,DSM 25025 | GCA_900104035 | scaffold | ncbi | 1166073 |
| 66792 | Aureimonas jatrophae strain L7-484,KACC 16230,DSM 25025 | 1166073.4 | wgs | patric | 1166073 |
| 66792 | Aureimonas jatrophae strain L7-484,KACC 16230,DSM 25025 | 1166073.5 | wgs | patric | 1166073 |
| 66792 | Aureimonas jatrophae L7-484 | 2651870106 | draft | img | 1166073 |
| 66792 | Aureimonas jatrophae DSM 25025 | 2829881168 | draft | img | 1166073 |
GC content
- @ref: 21224
- GC-content: 66.1
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 98 | no |
| motile | yes | 80.197 | no |
| flagellated | no | 73.24 | no |
| gram-positive | no | 97.769 | no |
| anaerobic | no | 98.145 | no |
| aerobic | yes | 92.325 | no |
| halophile | no | 90.103 | no |
| spore-forming | no | 95.986 | no |
| glucose-ferment | no | 87.665 | no |
| thermophile | no | 99.305 | yes |
| glucose-util | yes | 95.07 | no |
External links
@ref: 21224
culture collection no.: DSM 25025, KACC 16230
straininfo link
- @ref: 87673
- straininfo: 401194
literature
- topic: Phylogeny
- Pubmed-ID: 22922534
- title: Aureimonas jatrophae sp. nov. and Aureimonas phyllosphaerae sp. nov., leaf-associated bacteria isolated from Jatropha curcas L.
- authors: Madhaiyan M, Hu CJ, Jegan Roy J, Kim SJ, Weon HY, Kwon SW, Ji L
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.041020-0
- year: 2012
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/ultrastructure, Jatropha/*microbiology, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Plant Leaves/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Singapore, Ubiquinone/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21224 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25025 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25025) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 87673 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401194.1 |