Strain identifier
BacDive ID: 23563
Type strain:
Species: Alteromonas mediterranea
Strain Designation: AMMED64, Aegean Sea MED64, AMASMED64
Strain history: <- A. Gonzaga Moltó, Univ. Miguel Hernandez, Dept. Microbiologia, Alicante, Spain; AMASMED64 <- A. Hagstrom, Marine Science, Univ. Kalmar, Sweden
NCBI tax ID(s): 314275 (species)
General
@ref: 20289
BacDive-ID: 23563
DSM-Number: 26499
keywords: genome sequence, Bacteria, Gram-negative
description: Alteromonas mediterranea AMMED64 is a Gram-negative bacterium that was isolated from superficial waters.
NCBI tax id
- NCBI tax id: 314275
- Matching level: species
strain history
- @ref: 20289
- history: <- A. Gonzaga Moltó, Univ. Miguel Hernandez, Dept. Microbiologia, Alicante, Spain; AMASMED64 <- A. Hagstrom, Marine Science, Univ. Kalmar, Sweden
doi: 10.13145/bacdive23563.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Alteromonas
- species: Alteromonas mediterranea
- full scientific name: Alteromonas mediterranea Ivanova et al. 2015
@ref: 20289
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Alteromonas
species: Alteromonas mediterranea
full scientific name: Alteromonas mediterranea Ivanova et al. 2015
strain designation: AMMED64, Aegean Sea MED64, AMASMED64
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 20289
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 20289
- growth: positive
- type: growth
- temperature: 20
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 95.157
Isolation, sampling and environmental information
isolation
- @ref: 20289
- sample type: superficial waters
- geographic location: Aegean Sea, ("32°81' N, 34°69'E") at a depth of 5 m
- country: Lebanon
- origin.country: LBN
- continent: Asia
- latitude: 33.35
- longitude: 35.15
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Surface water
Safety information
risk assessment
- @ref: 20289
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Alteromonas mediterranea MED64 Aegean Sea MED64
- accession: GCA_000439495
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1300254
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.869 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 70.768 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 95.157 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 99.5 | yes |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 87.828 | no |
External links
@ref: 20289
culture collection no.: DSM 26499, MED 64
straininfo link
- @ref: 87657
- straininfo: 407810
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20289 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26499 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26499) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
87657 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407810.1 |