Strain identifier

BacDive ID: 23528

Type strain: Yes

Species: Aerococcus vaginalis

Strain Designation: BV2

Strain history: M. Tohno BV2.

NCBI tax ID(s): 1323230 (species)

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General

@ref: 20256

BacDive-ID: 23528

DSM-Number: 27293

keywords: 16S sequence, Bacteria, microaerophile, mesophilic

description: Aerococcus vaginalis BV2 is a microaerophile, mesophilic bacterium that was isolated from vaginal mucosa of a healthy beef cow .

NCBI tax id

  • NCBI tax id: 1323230
  • Matching level: species

strain history

@refhistory
20256<- M. Tohno, National Agriculture and Food Res. Org. (NARO), Nat. Inst. of Livestock and Grassland Science, Tochigi, Japan; BV2
67770M. Tohno BV2.

doi: 10.13145/bacdive23528.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Aerococcus
  • species: Aerococcus vaginalis
  • full scientific name: Aerococcus vaginalis Tohno et al. 2014

@ref: 20256

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Aerococcus

species: Aerococcus vaginalis

full scientific name: Aerococcus vaginalis Tohno et al. 2014

strain designation: BV2

type strain: yes

Morphology

colony morphology

  • @ref: 20256
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20256MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
20256COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
20256positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 20256
  • oxygen tolerance: microaerophile

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
20256--------------------------------------------------
20256--------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20256vaginal mucosa of a healthy beef cow (Japanese Black x Holstein-Friesian)Tochigi, Nasushiobara, National Institute of Livestock and Grassland ScienceJapanJPNAsia
67770Vaginal mucosa of a beef cow maintained in NasushiobaraTochigiJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Urogenital tract#Vagina

taxonmaps

  • @ref: 69479
  • File name: preview.99_184041.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_67806;97_88130;98_119812;99_184041&stattab=map
  • Last taxonomy: Aerococcus vaginalis subclade
  • 16S sequence: LC589214
  • Sequence Identity:
  • Total samples: 5028
  • soil counts: 430
  • aquatic counts: 77
  • animal counts: 4462
  • plant counts: 59

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20256Aerococcus vaginalis gene for 16S ribosomal RNA, partial sequenceAB8184931469ena1323230
67770Aerococcus vaginalis JCM 19163 gene for 16S rRNA, partial sequenceLC5892141483ena1323230

GC content

  • @ref: 20256
  • GC-content: 44.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 20256

culture collection no.: DSM 27293, JCM 19163

straininfo link

  • @ref: 87632
  • straininfo: 405600

literature

  • topic: Phylogeny
  • Pubmed-ID: 24421273
  • title: Aerococcus vaginalis sp. nov., isolated from the vaginal mucosa of a beef cow, and emended descriptions of Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii and Aerococcus sanguinicola.
  • authors: Tohno M, Kitahara M, Matsuyama S, Kimura K, Ohkuma M, Tajima K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.058081-0
  • year: 2014
  • mesh: Aerococcus/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Cattle/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Japan, Molecular Sequence Data, Mucous Membrane/microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Vagina/*microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20256Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27293Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27293)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87632Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405600.1