Strain identifier

BacDive ID: 23491

Type strain: Yes

Species: Belnapia soli

Strain Designation: PB-K8

Strain history: L. Jin PB-K8.

NCBI tax ID(s): 1055355 (species)

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General

@ref: 20458

BacDive-ID: 23491

DSM-Number: 28067

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, coccus-shaped

description: Belnapia soli PB-K8 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil under grass.

NCBI tax id

  • NCBI tax id: 1055355
  • Matching level: species

strain history

@refhistory
20458<- KCTC <- H.-M. Oh, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea; PB-K8
67770L. Jin PB-K8.

doi: 10.13145/bacdive23491.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Belnapia
  • species: Belnapia soli
  • full scientific name: Belnapia soli Jin et al. 2013

@ref: 20458

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Belnapia

species: Belnapia soli

full scientific name: Belnapia soli Jin et al. 2013

strain designation: PB-K8

type strain: yes

Morphology

cell morphology

  • @ref: 30823
  • gram stain: negative
  • cell length: 0.86 µm
  • cell width: 0.85 µm
  • cell shape: coccus-shaped
  • motility: no

pigmentation

  • @ref: 30823
  • production: yes

multimedia

  • @ref: 20458
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28067.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20458R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
20458REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://mediadive.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20458positivegrowth28mesophilic
30823positivegrowth04-37
30823positiveoptimum30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
30823positivegrowth5.0-8.0
30823positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30823
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30823
  • spore formation: no

halophily

  • @ref: 30823
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 01-03 %

observation

  • @ref: 67770
  • observation: quinones: Q-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
30823168082-dehydro-D-gluconate+carbon source
30823370543-hydroxybutyrate+carbon source
30823581435-dehydro-D-gluconate+carbon source
3082330089acetate+carbon source
3082317240itaconate+carbon source
3082315792malonate+carbon source
3082317272propionate+carbon source
3082333942ribose+carbon source
308239300suberic acid+carbon source
3082331011valerate+carbon source

enzymes

@refvalueactivityec
30823acid phosphatase+3.1.3.2
30823catalase+1.11.1.6
30823urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
20458soil under grassDaejeonRepublic of KoreaKORAsia36.3678127.363
67770Grass soilDaejeonRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_28741.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_3099;97_3800;98_4826;99_28741&stattab=map
  • Last taxonomy: Belnapia
  • 16S sequence: JN171665
  • Sequence Identity:
  • Total samples: 4613
  • soil counts: 2786
  • aquatic counts: 429
  • animal counts: 739
  • plant counts: 659

Safety information

risk assessment

  • @ref: 20458
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20458
  • description: Belnapia soli strain PB-K8 16S ribosomal RNA gene, partial sequence
  • accession: JN171665
  • length: 1345
  • database: ena
  • NCBI tax ID: 1055355

GC content

@refGC-contentmethod
3082372.1
6777072.1high performance liquid chromatography (HPLC)

External links

@ref: 20458

culture collection no.: DSM 28067, JCM 18033, KCTC 23765

straininfo link

  • @ref: 87612
  • straininfo: 405020

literature

  • topic: Phylogeny
  • Pubmed-ID: 23024144
  • title: Belnapia soli sp. nov., a proteobacterium isolated from grass soil.
  • authors: Jin L, Lee HG, No KJ, Ko SR, Kim HS, Ahn CY, Oh HM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.045302-0
  • year: 2012
  • mesh: Acetobacteraceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20458Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28067Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28067)
30823Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172715428776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
87612Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405020.1