Strain identifier
BacDive ID: 23451
Type strain:
Species: Peptoniphilus grossensis
Strain Designation: ph5
Strain history: <- P. Hugon, Timone Hospital, Marseille, France; ph5
NCBI tax ID(s): 1465756 (species)
General
@ref: 19269
BacDive-ID: 23451
DSM-Number: 25475
keywords: genome sequence, 16S sequence, Bacteria, obligate anaerobe, mesophilic
description: Peptoniphilus grossensis ph5 is an obligate anaerobe, mesophilic bacterium that was isolated from human feces.
NCBI tax id
- NCBI tax id: 1465756
- Matching level: species
strain history
- @ref: 19269
- history: <- P. Hugon, Timone Hospital, Marseille, France; ph5
doi: 10.13145/bacdive23451.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptoniphilaceae
- genus: Peptoniphilus
- species: Peptoniphilus grossensis
- full scientific name: Peptoniphilus grossensis Mishra et al. 2012
@ref: 19269
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptoniphilaceae
genus: Peptoniphilus
species: Peptoniphilus grossensis
full scientific name: Peptoniphilus grossensis Mishra et al. 2012
strain designation: ph5
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
19269 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
19269 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 19269
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 19269
- oxygen tolerance: obligate anaerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | + | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | + | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | - | 3.4.11.2 |
68380 | tyrosine arylamidase | + | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | + | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | + | |
68380 | tryptophan deaminase | + | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | - | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19269 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | +/- | + | - | - | - | + | - | + | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 19269
- sample type: human feces
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
16S sequences
- @ref: 19269
- description: Peptoniphilus grossensis ph5 16S ribosomal RNA gene, partial sequence
- accession: JN837491
- length: 1482
- database: ena
- NCBI tax ID: 1118057
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Peptoniphilus grossensis ph5 | GCA_000311825 | scaffold | ncbi | 1118057 |
66792 | Peptoniphilus grossensis ph5 | 2547132150 | draft | img | 1118057 |
GC content
- @ref: 19269
- GC-content: 33.9
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 91.18 | no |
flagellated | no | 96.982 | no |
gram-positive | yes | 90.699 | no |
anaerobic | yes | 99.495 | yes |
aerobic | no | 98.711 | no |
halophile | no | 68.325 | no |
spore-forming | no | 80.649 | no |
glucose-util | yes | 73.513 | no |
thermophile | no | 98.749 | yes |
glucose-ferment | yes | 55.113 | no |
External links
@ref: 19269
culture collection no.: DSM 25475, CSUR P184, KCTC 15413
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
19269 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25475) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25475 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68380 | Automatically annotated from API rID32A |