Strain identifier
BacDive ID: 23442
Type strain: 
Species: Rhodothermus sp.
Strain Designation: AR 3
Strain history: R. Tanaka AR3.
NCBI tax ID(s): 2591385 (species)
version 8.1 (current version)
General
@ref: 19084
BacDive-ID: 23442
DSM-Number: 18403
keywords: 16S sequence, Bacteria, thermophilic
description: Rhodothermus sp. AR 3 is a thermophilic bacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 2591385
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19084 | <- S. Kawaichi, Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto Univ., Japan; AR 3 <- R. Tanaka |
| 67770 | R. Tanaka AR3. |
doi: 10.13145/bacdive23442.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/rhodothermota
- domain: Bacteria
- phylum: Rhodothermota
- class: Rhodothermia
- order: Rhodothermales
- family: Rhodothermaceae
- genus: Rhodothermus
- species: Rhodothermus sp.
- full scientific name: Rhodothermus Alfredsson et al. 1995
@ref: 19084
domain: Bacteria
phylum: Rhodothermaeota
class: Rhodothermia
order: Cytophagales
family: Rhodothermaceae
genus: Rhodothermus
species: Rhodothermus sp.
full scientific name: Rhodothermus sp.
strain designation: AR 3
type strain: no
Culture and growth conditions
culture medium
- @ref: 19084
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19084 | positive | growth | 70 | thermophilic |
| 67770 | positive | growth | 70 | thermophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19084 | hot spring | Arima, Hyogo | Japan | JPN | Asia |
| 67770 | Terrestrial hot spring at Arima | Hyogo Pref. | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_7548.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_302;96_1200;97_1415;98_1722;99_7548&stattab=map
- Last taxonomy: Rhodothermus marinus
- 16S sequence: AB252420
- Sequence Identity:
- Total samples: 601
- soil counts: 193
- aquatic counts: 243
- animal counts: 134
- plant counts: 31
Sequence information
16S sequences
- @ref: 19084
- description: Rhodothermus clarus gene for 16S rRNA, partial sequence
- accession: AB252420
- length: 1441
- database: ena
- NCBI tax ID: 374811
GC content
- @ref: 67770
- GC-content: 66
- method: high performance liquid chromatography (HPLC)
External links
@ref: 19084
culture collection no.: DSM 18403, JCM 13927
straininfo link
- @ref: 87594
- straininfo: 408055
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19084 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18403) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18403 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 87594 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID408055.1 | StrainInfo: A central database for resolving microbial strain identifiers |