General

@ref: 16452

BacDive-ID: 23435

DSM-Number: 22660

keywords: 16S sequence, Bacteria, anaerobe, thermophilic

description: Caldinitratiruptor microaerophilus 62N is an anaerobe, thermophilic bacterium that was isolated from hot spring.

NCBI tax id

• NCBI tax id: 671077
• Matching level: species

strain history

doi: 10.13145/bacdive23435.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacillota
• domain: Bacteria
• phylum: Bacillota
• class: Bacillota, not assigned to class
• order: Bacillota, not assigned to order
• family: Bacillota, not assigned to family
• genus: Caldinitratiruptor
• species: Caldinitratiruptor microaerophilus
• full scientific name: Caldinitratiruptor microaerophilus Fardeau et al. 2010

@ref: 16452

domain: Bacteria

phylum: Firmicutes

class: Firmicutes, not assigned to class

order: Firmicutes, not assigned to order

family: Firmicutes, not assigned to family

genus: Caldinitratiruptor

species: Caldinitratiruptor microaerophilus

full scientific name: Caldinitratiruptor microaerophilus Fardeau et al. 2010

strain designation: 62N, CA62N

type strain: yes

Culture and growth conditions

culture medium

• @ref: 16452
• name: CALDINITRATIRUPTOR MEDIUM (DSMZ Medium 1251)
• growth: yes
• link: https://mediadive.dsmz.de/medium/1251
• composition: Name: CALDINITRATIRUPTOR MEDIUM (DSMZ Medium 1251) Composition: D-Glucose 3.5 g/l NaNO3 1.5 g/l Na2CO3 1.0 g/l Yeast extract 1.0 g/l NH4Cl 1.0 g/l MgCl2 x 6 H2O 0.5 g/l K2HPO4 0.3 g/l KH2PO4 0.3 g/l KCl 0.1 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l CuSO4 x 5 H2O 0.0001 g/l H3BO3 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Distilled water

culture temp

Physiology and metabolism

oxygen tolerance

• @ref: 16452
• oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_118174.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10726;96_46727;97_60010;98_79742;99_118174&stattab=map
• Last taxonomy: Caldinitratiruptor microaerophilus subclade
• 16S sequence: GQ405534
• Sequence Identity:
• Total samples: 402
• soil counts: 157
• aquatic counts: 97
• animal counts: 124
• plant counts: 24

Sequence information

16S sequences

• @ref: 16452
• description: Caldinitratiruptor microaerophilus strain CA62N 16S ribosomal RNA gene, partial sequence
• accession: GQ405534
• length: 1524
• database: ena
• NCBI tax ID: 671077

GC content

• @ref: 16452
• GC-content: 70.3
• method: high performance liquid chromatography (HPLC)

External links

@ref: 16452

culture collection no.: DSM 22660, JCM 16183

literature

• topic: Phylogeny
• Pubmed-ID: 20165893
• title: Caldinitratiruptor microaerophilus, gen. nov., sp. nov. isolated from a French hot spring (Chaudes-Aigues, Massif Central): a novel cultivated facultative microaerophilic anaerobic thermophile pertaining to the Symbiobacterium branch within the Firmicutes.
• authors: Fardeau ML, Barsotti V, Cayol JL, Guasco S, Michotey V, Joseph M, Bonin P, Ollivier B
• journal: Extremophiles
• DOI: 10.1007/s00792-010-0302-y
• year: 2010
• mesh: Bacteria, Anaerobic/*genetics, Base Composition/genetics, Ecosystem, Evolution, Molecular, France, Geologic Sediments, Hot Springs/*microbiology, Hot Temperature, Hydrogen-Ion Concentration, Microscopy, Electron/methods, Phenotype, Phylogeny, Polymerase Chain Reaction, Sequence Analysis, DNA, Temperature
• topic2: Stress

Reference