Strain identifier

BacDive ID: 23434

Type strain: Yes

Species: Aciduliprofundum boonei

Strain Designation: T469

Strain history: <- A.-L. Reysenbach, Portland State Univ., USA; T469 <- A.-L. Reysenbach {2006}

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8186

BacDive-ID: 23434

DSM-Number: 19572

keywords: genome sequence, 16S sequence, Archaea, anaerobe, thermophilic

description: Aciduliprofundum boonei T469 is an anaerobe, thermophilic archaeon that was isolated from deep-sea hydrothermal vent.

NCBI tax id

NCBI tax idMatching level
439481strain
379547species

strain history

  • @ref: 8186
  • history: <- A.-L. Reysenbach, Portland State Univ., USA; T469 <- A.-L. Reysenbach {2006}

doi: 10.13145/bacdive23434.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanobacteriota, not assigned to class
  • order: Methanobacteriota, not assigned to order
  • family: Methanobacteriota, not assigned to family
  • genus: Aciduliprofundum
  • species: Aciduliprofundum boonei
  • full scientific name: Candidatus Aciduliprofundum boonei Reysenbach et al. 2006

@ref: 8186

domain: Archaea

phylum: Euryarchaeota

class: Euryarchaeota, not assigned to class

order: Euryarchaeota, not assigned to order

family: Euryarchaeota, not assigned to family

genus: Aciduliprofundum

species: Aciduliprofundum boonei

full scientific name: Aciduliprofundum boonei Schouten et al. 2008

strain designation: T469

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 8186
  • name: ACIDULIPROFUNDUM MEDIUM (DSMZ Medium 1083)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1083
  • composition: Name: ACIDULIPROFUNDUM MEDIUM (DSMZ Medium 1083) Composition: Sulfur 9.99001 g/l Na3-citrate 2.93706 g/l MgCl2 x 6 H2O 2.74725 g/l Tryptone 0.999001 g/l Yeast extract 0.999001 g/l Na2S x 9 H2O 0.499501 g/l KCl 0.32967 g/l KH2PO4 0.27972 g/l (NH4)2SO4 0.0999001 g/l NaBr 0.04995 g/l MgSO4 x 7 H2O 0.02997 g/l NaCl 0.00999001 g/l MnSO4 x H2O 0.00499501 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.0027972 g/l ZnSO4 x 7 H2O 0.0017982 g/l CoCl2 x 6 H2O 0.0017982 g/l FeSO4 x 7 H2O 0.000999001 g/l CaCl2 x 2 H2O 0.000999001 g/l Sodium resazurin 0.0004995 g/l AlK(SO4)2 x 12 H2O 0.00017982 g/l Na2WO4 x 2 H2O 9.99001e-05 g/l Na2SeO4 9.99001e-05 g/l Na2MoO4 x 2 H2O 9.99001e-05 g/l H3BO3 9.99001e-05 g/l CuSO4 x 5 H2O 9.99001e-05 g/l Distilled water

culture temp

  • @ref: 8186
  • growth: positive
  • type: growth
  • temperature: 70
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 8186
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 8186
  • sample type: deep-sea hydrothermal vent
  • geographic location: Western Pacific Ocean, Eastern Lau Spreading Center, Mariner vent field
  • country: Tonga
  • origin.country: TON
  • continent: Australia and Oceania
  • latitude: -22.18
  • longitude: -176.602

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Hydrothermal vent
#Environmental#Aquatic#Marine
#Condition#Thermophilic (>45°C)

Sequence information

16S sequences

  • @ref: 8186
  • description: Aciduliprofundum boonei strain T469 16S ribosomal RNA gene, partial sequence
  • accession: DQ451875
  • length: 1409
  • database: ena
  • NCBI tax ID: 439481

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aciduliprofundum boonei T469GCA_000025665completencbi439481
66792Aciduliprofundum boonei T469GCA_000151085scaffoldncbi439481
66792Aciduliprofundum boonei T469646564501completeimg439481
66792Aciduliprofundum boonei T469439481.9completepatric439481
66792Aciduliprofundum boonei T469439481.10wgspatric439481

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno83.256no
flagellatedno97.548no
gram-positiveno96.045no
anaerobicyes99.3yes
aerobicno97.458yes
halophileno83.092no
spore-formingno97.091no
thermophileyes100yes
glucose-utilyes87.45no
glucose-fermentno56.628no

External links

@ref: 8186

culture collection no.: DSM 19572

literature

  • topic: Phylogeny
  • Pubmed-ID: 22859731
  • title: Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces.
  • authors: Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.033712-0
  • year: 2012
  • mesh: Aged, 80 and over, Archaea/*classification/genetics/isolation & purification, Base Composition, DNA, Archaeal/genetics, Feces/*microbiology, Genome, Archaeal, Humans, Male, Methane/*metabolism, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8186Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19572)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19572
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880