Strain identifier
BacDive ID: 23434
Type strain:
Species: Aciduliprofundum boonei
Strain Designation: T469
Strain history: <- A.-L. Reysenbach, Portland State Univ., USA; T469 <- A.-L. Reysenbach {2006}
NCBI tax ID(s): 439481 (strain), 379547 (species)
General
@ref: 8186
BacDive-ID: 23434
DSM-Number: 19572
keywords: genome sequence, 16S sequence, Archaea, anaerobe, thermophilic
description: Aciduliprofundum boonei T469 is an anaerobe, thermophilic archaeon that was isolated from deep-sea hydrothermal vent.
NCBI tax id
NCBI tax id | Matching level |
---|---|
439481 | strain |
379547 | species |
strain history
- @ref: 8186
- history: <- A.-L. Reysenbach, Portland State Univ., USA; T469 <- A.-L. Reysenbach {2006}
doi: 10.13145/bacdive23434.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanobacteriota, not assigned to class
- order: Methanobacteriota, not assigned to order
- family: Methanobacteriota, not assigned to family
- genus: Aciduliprofundum
- species: Aciduliprofundum boonei
- full scientific name: Candidatus Aciduliprofundum boonei Reysenbach et al. 2006
@ref: 8186
domain: Archaea
phylum: Euryarchaeota
class: Euryarchaeota, not assigned to class
order: Euryarchaeota, not assigned to order
family: Euryarchaeota, not assigned to family
genus: Aciduliprofundum
species: Aciduliprofundum boonei
full scientific name: Aciduliprofundum boonei Schouten et al. 2008
strain designation: T469
type strain: yes
Culture and growth conditions
culture medium
- @ref: 8186
- name: ACIDULIPROFUNDUM MEDIUM (DSMZ Medium 1083)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1083
- composition: Name: ACIDULIPROFUNDUM MEDIUM (DSMZ Medium 1083) Composition: Sulfur 9.99001 g/l Na3-citrate 2.93706 g/l MgCl2 x 6 H2O 2.74725 g/l Tryptone 0.999001 g/l Yeast extract 0.999001 g/l Na2S x 9 H2O 0.499501 g/l KCl 0.32967 g/l KH2PO4 0.27972 g/l (NH4)2SO4 0.0999001 g/l NaBr 0.04995 g/l MgSO4 x 7 H2O 0.02997 g/l NaCl 0.00999001 g/l MnSO4 x H2O 0.00499501 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.0027972 g/l ZnSO4 x 7 H2O 0.0017982 g/l CoCl2 x 6 H2O 0.0017982 g/l FeSO4 x 7 H2O 0.000999001 g/l CaCl2 x 2 H2O 0.000999001 g/l Sodium resazurin 0.0004995 g/l AlK(SO4)2 x 12 H2O 0.00017982 g/l Na2WO4 x 2 H2O 9.99001e-05 g/l Na2SeO4 9.99001e-05 g/l Na2MoO4 x 2 H2O 9.99001e-05 g/l H3BO3 9.99001e-05 g/l CuSO4 x 5 H2O 9.99001e-05 g/l Distilled water
culture temp
- @ref: 8186
- growth: positive
- type: growth
- temperature: 70
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 8186
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 8186
- sample type: deep-sea hydrothermal vent
- geographic location: Western Pacific Ocean, Eastern Lau Spreading Center, Mariner vent field
- country: Tonga
- origin.country: TON
- continent: Australia and Oceania
- latitude: -22.18
- longitude: -176.602
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Hydrothermal vent |
#Environmental | #Aquatic | #Marine |
#Condition | #Thermophilic (>45°C) |
Sequence information
16S sequences
- @ref: 8186
- description: Aciduliprofundum boonei strain T469 16S ribosomal RNA gene, partial sequence
- accession: DQ451875
- length: 1409
- database: ena
- NCBI tax ID: 439481
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aciduliprofundum boonei T469 | GCA_000025665 | complete | ncbi | 439481 |
66792 | Aciduliprofundum boonei T469 | GCA_000151085 | scaffold | ncbi | 439481 |
66792 | Aciduliprofundum boonei T469 | 646564501 | complete | img | 439481 |
66792 | Aciduliprofundum boonei T469 | 439481.9 | complete | patric | 439481 |
66792 | Aciduliprofundum boonei T469 | 439481.10 | wgs | patric | 439481 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 83.256 | no |
flagellated | no | 97.548 | no |
gram-positive | no | 96.045 | no |
anaerobic | yes | 99.3 | yes |
aerobic | no | 97.458 | yes |
halophile | no | 83.092 | no |
spore-forming | no | 97.091 | no |
thermophile | yes | 100 | yes |
glucose-util | yes | 87.45 | no |
glucose-ferment | no | 56.628 | no |
External links
@ref: 8186
culture collection no.: DSM 19572
literature
- topic: Phylogeny
- Pubmed-ID: 22859731
- title: Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces.
- authors: Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.033712-0
- year: 2012
- mesh: Aged, 80 and over, Archaea/*classification/genetics/isolation & purification, Base Composition, DNA, Archaeal/genetics, Feces/*microbiology, Genome, Archaeal, Humans, Male, Methane/*metabolism, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8186 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19572) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19572 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |