Strain identifier

BacDive ID: 23389

Type strain: No

Species: unclassified bacterium

Strain Designation: XB90

Strain history: <- K.-J. Chin, Max-Planck-Institut für terrestrische Mikrobiologie, Marburg, Germany; XB90 <- K.-J. Chin {1994}

NCBI tax ID(s): 1869227 (species)

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General

@ref: 4767

BacDive-ID: 23389

DSM-Number: 12595

keywords: 16S sequence, anaerobe, mesophilic

description: unclassified bacterium XB90 is an anaerobe, mesophilic prokaryote that was isolated from anoxic rice paddy soil.

NCBI tax id

  • NCBI tax id: 1869227
  • Matching level: species

strain history

  • @ref: 4767
  • history: <- K.-J. Chin, Max-Planck-Institut für terrestrische Mikrobiologie, Marburg, Germany; XB90 <- K.-J. Chin {1994}

doi: 10.13145/bacdive23389.20230509.8.1

Name and taxonomic classification

@ref: 4767

phylum: Not assigned to order

class: Not assigned to order

order: Clostridiales

family: Not assigned to family

genus: unclassified

species: unclassified bacterium

full scientific name: unclassified bacterium

strain designation: XB90

type strain: no

Culture and growth conditions

culture medium

  • @ref: 4767
  • name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/503
  • composition: Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503; with strain-specific modifications) Composition: D-Glucose 1.79462 g/l Na2CO3 1.49551 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l Calcium pantothenate 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

culture temp

  • @ref: 4767
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4767
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4767
  • sample type: anoxic rice paddy soil
  • geographic location: Vercelli
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_69086.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_33;96_10166;97_37487;98_48590;99_69086&stattab=map
  • Last taxonomy: Anaerotaenia
  • 16S sequence: AJ229234
  • Sequence Identity:
  • Total samples: 536
  • soil counts: 221
  • aquatic counts: 273
  • animal counts: 34
  • plant counts: 8

Sequence information

16S sequences

  • @ref: 4767
  • description: Clostridium from anoxic bulk soil 16S rRNA gene (strain XB90)
  • accession: AJ229234
  • length: 1445
  • database: ena
  • NCBI tax ID: 107715

External links

@ref: 4767

culture collection no.: DSM 12595

Reference

@idauthorscataloguedoi/urltitle
4767Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12595)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12595
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta