Strain identifier
BacDive ID: 23344
Type strain: 
Species: Lysobacter arseniciresistens
Strain Designation: ZS79
Strain history: <- KCTC <- G. Wang, Nat. Key Laboratory of Agricultural Microbiology, Hubei, Wuhan
NCBI tax ID(s): 1385522 (species)
version 8.1 (current version)
General
@ref: 19157
BacDive-ID: 23344
DSM-Number: 27222
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Lysobacter arseniciresistens ZS79 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from subsurface soil of Tieshan iron mine.
NCBI tax id
- NCBI tax id: 1385522
- Matching level: species
strain history
- @ref: 19157
- history: <- KCTC <- G. Wang, Nat. Key Laboratory of Agricultural Microbiology, Hubei, Wuhan
doi: 10.13145/bacdive23344.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Lysobacter
- species: Lysobacter arseniciresistens
- full scientific name: Lysobacter arseniciresistens Luo et al. 2012
@ref: 19157
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Lysobacter
species: Lysobacter arseniciresistens
full scientific name: Lysobacter arseniciresistens Luo et al. 2012
strain designation: ZS79
type strain: yes
Morphology
cell morphology
- @ref: 30361
- gram stain: negative
- cell length: 1.9 µm
- cell width: 0.4 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30361
- production: yes
Culture and growth conditions
culture medium
- @ref: 19157
- name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830c
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19157 | positive | growth | 28 | mesophilic |
| 30361 | positive | growth | 04-37 | |
| 30361 | positive | optimum | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30361 | positive | growth | 05-09 | alkaliphile |
| 30361 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30361
- oxygen tolerance: aerobe
halophily
- @ref: 30361
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-4 %
metabolite production
- @ref: 30361
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30361 | acid phosphatase | + | 3.1.3.2 |
| 30361 | alkaline phosphatase | + | 3.1.3.1 |
| 30361 | catalase | + | 1.11.1.6 |
| 30361 | gelatinase | + | |
| 30361 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 19157
- sample type: subsurface soil of Tieshan iron mine
- geographic location: Hubei Province, Daye City
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 30.2072
- longitude: 114.901
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Other | #Mine |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_1975.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_1095;97_1283;98_1545;99_1975&stattab=map
- Last taxonomy: Lysobacter arseniciresistens
- 16S sequence: HQ315827
- Sequence Identity:
- Total samples: 264
- soil counts: 171
- aquatic counts: 23
- animal counts: 62
- plant counts: 8
Safety information
risk assessment
- @ref: 19157
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19157
- description: Lysobacter arseniciresistens ZS79 16S ribosomal RNA gene, partial sequence
- accession: HQ315827
- length: 1466
- database: ena
- NCBI tax ID: 913325
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lysobacter arseniciresistens ZS79 | GCA_000768335 | contig | ncbi | 913325 |
| 66792 | Lysobacter arseniciresistens ZS79 | 913325.4 | wgs | patric | 913325 |
| 66792 | Lysobacter arseniciresistens ZS79 | 2634166449 | draft | img | 913325 |
GC content
- @ref: 19157
- GC-content: 70.7
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 85.889 | yes |
| flagellated | no | 80.471 | no |
| gram-positive | no | 98.577 | no |
| anaerobic | no | 99.1 | no |
| halophile | no | 93.276 | no |
| spore-forming | no | 95.591 | no |
| thermophile | no | 97.318 | yes |
| glucose-util | yes | 86.343 | no |
| aerobic | yes | 91.717 | yes |
| glucose-ferment | no | 92.655 | no |
External links
@ref: 19157
culture collection no.: DSM 27222, CGMCC 1.10752, KCTC 23365
straininfo link
- @ref: 87561
- straininfo: 399943
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21890727 | Lysobacter arseniciresistens sp. nov., an arsenite-resistant bacterium isolated from iron-mined soil. | Luo G, Shi Z, Wang G | Int J Syst Evol Microbiol | 10.1099/ijs.0.034405-0 | 2011 | Aerobiosis, Arsenites/*toxicity, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Drug Resistance, Bacterial, Fatty Acids/analysis, Locomotion, Lysobacter/*classification/drug effects/genetics/*isolation & purification, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Phylogeny | 28840359 | Lysobacter zhanggongensis sp. nov. Isolated from a Pit Mud. | Zhang XF, Wang HH, Sun XY, Pan CM | Curr Microbiol | 10.1007/s00284-017-1330-y | 2017 | Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Locomotion, Lysobacter/*classification/genetics/*isolation & purification/physiology, Microscopy, Electron, Scanning, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
| Phylogeny | 36260505 | Lysobacter selenitireducens sp. nov., isolated from river sediment. | Mao S, Li S, Guo B, Mu W, Hou X, Liu H, Wei S, Liu A, Kong L, Chen Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005550 | 2022 | *Lysobacter/genetics, RNA, Ribosomal, 16S/genetics, Ubiquinone/chemistry, Phylogeny, Phosphatidylethanolamines/metabolism, Base Composition, Rivers, Sodium Chloride, Cardiolipins, Soil Microbiology, *DNA, Bacterial/genetics, Fatty Acids/chemistry, Bacterial Typing Techniques, Sequence Analysis, DNA, Phospholipids/chemistry, Glycolipids/analysis, Amino Acids/metabolism, Nucleotides | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 19157 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27222) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27222 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30361 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26701 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87561 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399943.1 | StrainInfo: A central database for resolving microbial strain identifiers |