Strain identifier
BacDive ID: 23337
Type strain: 
Species: Anaerospora hongkongensis
Strain Designation: HKU 15
Strain history: <- P. C. Y. Woo, Queen Mary Hospital, University of Hong Kong, China; HKU 15
NCBI tax ID(s): 244830 (species)
version 8.1 (current version)
General
@ref: 6209
BacDive-ID: 23337
DSM-Number: 15969
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Anaerospora hongkongensis HKU 15 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from human; blood culture of an intravenous drug abuser with pseudobacteremia.
NCBI tax id
- NCBI tax id: 244830
- Matching level: species
strain history
- @ref: 6209
- history: <- P. C. Y. Woo, Queen Mary Hospital, University of Hong Kong, China; HKU 15
doi: 10.13145/bacdive23337.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Sporomusaceae
- genus: Anaerospora
- species: Anaerospora hongkongensis
- full scientific name: Anaerospora hongkongensis Woo et al. 2016
@ref: 6209
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Veillonellales
family: Acidaminococcaceae
genus: Anaerospora
species: Anaerospora hongkongensis
full scientific name: Anaerospora hongkongensis Woo et al. 2016
strain designation: HKU 15
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.234 | |
| 69480 | 99.289 | negative |
Culture and growth conditions
culture medium
- @ref: 6209
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
culture temp
- @ref: 6209
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 6209 | anaerobe | |
| 69480 | anaerobe | 96.552 |
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 6209
- sample type: human; blood culture of an intravenous drug abuser with pseudobacteremia
- country: Hong Kong
- origin.country: HKG
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | #Blood culture |
| #Host | #Human |
taxonmaps
- @ref: 69479
- File name: preview.99_9811.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_208;96_4772;97_5787;98_7264;99_9811&stattab=map
- Last taxonomy: Anaerospora hongkongensis subclade
- 16S sequence: AY372052
- Sequence Identity:
- Total samples: 5725
- soil counts: 2511
- aquatic counts: 1590
- animal counts: 974
- plant counts: 650
Safety information
risk assessment
- @ref: 6209
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 6209 | Anaerospora hongkongensis 16S ribosomal RNA gene, partial sequence | AY372050 | 1517 | ena | 244830 |
| 6209 | Anaerospora hongkongensis 16S ribosomal RNA gene, partial sequence | AY372051 | 1477 | ena | 244830 |
| 6209 | Anaerospora hongkongensis 16S ribosomal RNA gene, partial sequence | AY372052 | 1562 | ena | 244830 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerospora hongkongensis DSM 15969 | GCA_004339805 | scaffold | ncbi | 244830 |
| 66792 | Anaerospora hongkongensis strain DSM 15969 | 244830.3 | wgs | patric | 244830 |
| 66792 | Anaerospora hongkongensis DSM 15969 | 2799112278 | draft | img | 244830 |
GC content
- @ref: 6209
- GC-content: 47
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 56 | no |
| motile | yes | 90.533 | no |
| flagellated | yes | 56.193 | no |
| gram-positive | no | 94.772 | no |
| anaerobic | yes | 97.628 | yes |
| aerobic | no | 93.761 | yes |
| halophile | no | 96.686 | no |
| spore-forming | yes | 86.393 | no |
| thermophile | no | 98.804 | no |
| glucose-util | yes | 78.664 | no |
| glucose-ferment | no | 72.79 | no |
External links
@ref: 6209
culture collection no.: DSM 15969, LMG 22014, NBRC 110945
straininfo link
- @ref: 87554
- straininfo: 398528
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6209 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15969) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15969 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 87554 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398528.1 | StrainInfo: A central database for resolving microbial strain identifiers |