Strain identifier
BacDive ID: 23324
Type strain: 
Species: Syntrophus aciditrophicus
Strain Designation: SB
Strain history: M. J. McInerney strain SB.
NCBI tax ID(s): 316277 (species)
version 8.1 (current version)
General
@ref: 19044
BacDive-ID: 23324
DSM-Number: 26646
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Syntrophus aciditrophicus SB is an anaerobe, mesophilic bacterium that was isolated from secondary anaerobic digestor sludge.
NCBI tax id
- NCBI tax id: 316277
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19044 | <- M. J. McInerney, Dept. Plant Biology and Microbiol., Univ. Oklahoma, USA; SB <- B. Hopkins {1994} |
| 67770 | M. J. McInerney strain SB. |
doi: 10.13145/bacdive23324.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Syntrophobacterales
- family: Syntrophaceae
- genus: Syntrophus
- species: Syntrophus aciditrophicus
- full scientific name: Syntrophus aciditrophicus Jackson et al. 2015
@ref: 19044
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Syntrophobacterales
family: Syntrophaceae
genus: Syntrophus
species: Syntrophus aciditrophicus
full scientific name: Syntrophus aciditrophicus Jackson et al. 2015
strain designation: SB
type strain: yes
Morphology
colony morphology
- @ref: 19044
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 19044
- name: PELOTOMACULUM MEDIUM (DSMZ Medium 960)
- growth: yes
- link: https://mediadive.dsmz.de/medium/960
- composition: Name: PELOTOMACULUM MEDIUM (DSMZ Medium 960; with strain-specific modifications) Composition: Na2CO3 1.49701 g/l Na-crotonate 0.858283 g/l NH4Cl 0.538922 g/l Yeast extract 0.499002 g/l Na2S x 9 H2O 0.299401 g/l L-Cysteine HCl x H2O 0.299401 g/l MgCl2 x 6 H2O 0.199601 g/l KH2PO4 0.139721 g/l Nitrilotriacetic acid 0.0127745 g/l NaCl 0.000998004 g/l FeCl2 x 4 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l CaCl2 x 2 H2O 9.98004e-05 g/l NiCl2 x 6 H2O 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l ZnCl2 9.98004e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Na2WO4 x 2 H2O 3.99202e-05 g/l CoCl2 x 6 H2O 2.99401e-05 g/l Na2MoO4 x 2 H2O 2.99401e-05 g/l Na2SeO3 x 5 H2O 2.99401e-05 g/l CuCl2 1.99601e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l H3BO3 9.98004e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19044 | positive | growth | 35 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 19044
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19044 | secondary anaerobic digestor sludge | OK, Norman | USA | USA | North America |
| 67770 | Sewage sludge from the second anaerobic digestor at the municipal wastewater treatment plant in Norman | OK | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Anaerobic digestor |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Condition | #Anoxic (anaerobic) |
Safety information
risk assessment
- @ref: 19044
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19044
- description: Syntrophus acidotrophicus 16S ribosomal RNA gene, partial sequence
- accession: U86447
- length: 1290
- database: ena
- NCBI tax ID: 316277
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Syntrophus aciditrophicus SB | GCA_000013405 | complete | ncbi | 56780 |
| 66792 | Syntrophus aciditrophicus SB | 56780.15 | complete | patric | 56780 |
| 66792 | Syntrophus aciditrophicus SB | 637000317 | complete | img | 56780 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 19044 | 51.5 | sequence analysis |
| 67770 | 43.1 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 80.846 | no |
| flagellated | no | 87.042 | no |
| gram-positive | no | 99.501 | no |
| anaerobic | yes | 99.63 | yes |
| halophile | no | 90.656 | no |
| spore-forming | no | 94.149 | no |
| glucose-util | no | 60.43 | no |
| aerobic | no | 98.458 | no |
| thermophile | no | 55.547 | no |
| glucose-ferment | no | 81.561 | no |
External links
@ref: 19044
culture collection no.: DSM 26646, ATCC 700169, JCM 18717
straininfo link
- @ref: 87542
- straininfo: 407116
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19044 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26646) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26646 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 87542 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407116.1 | StrainInfo: A central database for resolving microbial strain identifiers |