Strain identifier

BacDive ID: 23317

Type strain: Yes

Species: Streptomyces lannensis

Strain Designation: TA4-8

Strain history: P. Chantawannakul TA4-8.

NCBI tax ID(s): 766498 (species)

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General

@ref: 19319

BacDive-ID: 23317

DSM-Number: 42093

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, ovoid-shaped

description: Streptomyces lannensis TA4-8 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from stingless bee .

NCBI tax id

  • NCBI tax id: 766498
  • Matching level: species

strain history

@refhistory
19319<- JCM; JCM 16578 <- P. Chantawannakul; TA4-8
67770P. Chantawannakul TA4-8.

doi: 10.13145/bacdive23317.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces lannensis
  • full scientific name: Streptomyces lannensis Promnuan et al. 2013

@ref: 19319

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces lannensis

full scientific name: Streptomyces lannensis Promnuan et al. 2013

strain designation: TA4-8

type strain: yes

Morphology

cell morphology

  • @ref: 30853
  • gram stain: positive
  • cell shape: ovoid-shaped

colony morphology

@refcolony colormedium used
69343Clay brown (8003)ISP 2
69343Clay brown (8003)ISP 5
69343Brown beige (1011)ISP 4
69343Light ivory (1015)suter with tyrosine
69343Light ivory (1015)suter without tyrosine
69343Pale brown (8025)ISP 7
69343Sand yellow (1002)ISP 6
69343Tarpaulin grey (7010)ISP 3

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69343yesAerial myceliumSignal white (9003)ISP 2
69343yesAerial myceliumLight grey (7035), stone grey (7030)ISP 3
69343yesAerial myceliumSilk grey (7044), telegrey 2 (7046)ISP 4
69343yesAerial myceliumPure white (9010)ISP 5
69343noAerial myceliumISP 6
69343yesAerial myceliumStone grey (7030)ISP 7
69343noAerial myceliumsuter with tyrosine
69343noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
30853yes
69343noMelanin
69343yessoluble pigmentBrown beige (1011), green brown (8000), olive brown (8008), sand yellow (1002), ochre brown (8001), ochre yellow (1024)

multimedia

@refmultimedia contentcaptionintellectual property rights
69343DSM_42093_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69343DSM_42093_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
19319ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
19319STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf
19319GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19319positivegrowth28mesophilic
30853positivegrowth15-35
30853positiveoptimum30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30853positivegrowth04-12alkaliphile
30853positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 30853
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30853
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30853NaClpositiveoptimum3 %
69343NaClpositivegrowth0-2.5 %

observation

@refobservation
30853aggregates in chains
67770quinones: MK-9(H8), MK-9(H6), MK-9(H10)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6934322599arabinose+growth
3085322599arabinose+carbon source
3085328757fructose+carbon source
3085317234glucose+carbon source
3085329864mannitol+carbon source
3085317268myo-inositol+carbon source
3085316634raffinose+carbon source
3085317992sucrose+carbon source
3085318222xylose+carbon source
6934362968cellulose-growth
6934328757fructose+growth
6934317234glucose+growth
6934317268inositol+growth
6934337684mannose+growth
6934316634raffinose+growth
6934326546rhamnose+growth
6934317992sucrose+/-growth
6934318222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69343---+---+--+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69343++/-+/--+++/-+/--++++-+/-++++/-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
19319stingless bee (Tetragonilla collina)Tetragonilla collinaChiang Mai ProvinceThailandTHAAsia
67770Stingless bee (Tetragonilla collina)Tetragonilla collinaChiang Mai ProvinceThailandTHAAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Arthropoda
  • Cat3: #Insecta

Safety information

risk assessment

  • @ref: 19319
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19319
  • description: Streptomyces lannensis gene for 16S rRNA, partial sequence
  • accession: AB562508
  • length: 1512
  • database: ena
  • NCBI tax ID: 766498

GC content

@refGC-contentmethod
1931969.3high performance liquid chromatography (HPLC)
3085369.3

External links

@ref: 19319

culture collection no.: DSM 42093, JCM 16578, TISTR 1982

straininfo link

  • @ref: 87535
  • straininfo: 406787

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23002051Streptomyces chiangmaiensis sp. nov. and Streptomyces lannensis sp. nov., isolated from the South-East Asian stingless bee (Tetragonilla collina).Promnuan Y, Kudo T, Ohkuma M, Chantawannakul PInt J Syst Evol Microbiol10.1099/ijs.0.045930-02012Animals, Bacterial Typing Techniques, Base Composition, Bees/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny29327333Streptomyces flavalbus sp. nov., an actinobacterium isolated from rhizosphere of maize (Zea mays L.).Cao T, Shen Y, Zhao J, Liu C, Zhao X, Jin L, Li Y, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-017-1004-62018DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, *Soil Microbiology, Streptomyces/classification/genetics/*isolation & purification/metabolism, Zea mays/*growth & developmentMetabolism
Phylogeny32641781The genome insights of Streptomyces lannensis T1317-0309 reveals actinomycin D production.Dahal RH, Nguyen TM, Pandey RP, Yamaguchi T, Sohng JK, Noh J, Myung SW, Kim JJ Antibiot (Tokyo)10.1038/s41429-020-0343-02020Dactinomycin/*biosynthesis, Fermentation, Genes, Bacterial/genetics, Genome, Bacterial/*genetics, Microbial Sensitivity Tests, Multigene Family/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Secondary Metabolism/genetics, Streptomyces/*genetics/isolation & purification/metabolism, Whole Genome SequencingGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
19319Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42093)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42093
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30853Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2718328776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69343Wink, J.https://cdn.dsmz.de/wink/DSM%2042093.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
87535Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406787.1StrainInfo: A central database for resolving microbial strain identifiers