Strain identifier
BacDive ID: 23309
Type strain:
Species: Streptomyces incanus
Strain Designation: BK128
Strain history: CGMCC 4.5799 <-- B.-Y. Kim et al. BK128.
NCBI tax ID(s): 887453 (species)
General
@ref: 19163
BacDive-ID: 23309
DSM-Number: 42062
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Streptomyces incanus BK128 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil of a hay meadow.
NCBI tax id
- NCBI tax id: 887453
- Matching level: species
strain history
@ref | history |
---|---|
19163 | <- S. W. Kwon, KACC; KACC 21002 |
67770 | CGMCC 4.5799 <-- B.-Y. Kim et al. BK128. |
doi: 10.13145/bacdive23309.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces incanus
- full scientific name: Streptomyces incanus Kim et al. 2012
@ref: 19163
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces incanus
full scientific name: Streptomyces incanus Kim et al. 2012
strain designation: BK128
type strain: yes
Morphology
cell morphology
- @ref: 30450
- gram stain: positive
multimedia
- @ref: 19163
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42062.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
19163 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
19163 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19163 | positive | growth | 28 | mesophilic |
30450 | positive | growth | 10-37 | |
67770 | positive | growth | 28 | mesophilic |
culture pH
- @ref: 30450
- ability: positive
- type: growth
- pH: 05-10
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 30450
- oxygen tolerance: aerobe
spore formation
- @ref: 30450
- spore formation: yes
observation
- @ref: 67770
- observation: quinones: MK-9 (H6, MK-9(H8)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30450 | 18403 | L-arabitol | + | carbon source |
30450 | 17306 | maltose | + | carbon source |
30450 | 28053 | melibiose | + | carbon source |
30450 | 30911 | sorbitol | + | carbon source |
30450 | 4853 | esculin | + | hydrolysis |
enzymes
- @ref: 30450
- value: gelatinase
- activity: +
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
19163 | soil of a hay meadow | Northumberland, Cockle Park Experimental Farm | United Kingdom | GBR | Europe |
67770 | Soil of a hay meadow at Cockle Park Experimental Farm | Ulgham, Morpeth, Northumberland | United Kingdom | GBR | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Meadow |
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
- @ref: 19163
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19163
- description: Streptomyces incanus partial 16S rRNA gene, type strain BK128T
- accession: FR692095
- length: 1458
- database: ena
- NCBI tax ID: 887453
GC content
@ref | GC-content | method |
---|---|---|
19163 | 69.2 | thermal denaturation, midpoint method (Tm) |
30450 | 69.2 |
External links
@ref: 19163
culture collection no.: DSM 42062, CGMCC 4.5799, KACC 21002, NRRL B-59129, JCM 19677
straininfo link
- @ref: 87527
- straininfo: 401098
literature
- topic: Phylogeny
- Pubmed-ID: 21984681
- title: Streptomyces herbaceus sp. nov., Streptomyces incanus sp. nov. and Streptomyces pratens sp. nov., isolated from the soil of a hay meadow.
- authors: Kim BY, Rong X, Zucchi TD, Bonda ANV, Huang Y, Goodfellow M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.036384-0
- year: 2011
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Genotype, Microscopy, Electron, Scanning, Molecular Sequence Data, Phenotype, *Phylogeny, Poaceae, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, *Soil Microbiology, Species Specificity, Spores, Bacterial/ultrastructure, Streptomyces/*classification/genetics/isolation & purification
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
19163 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42062) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42062 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30450 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26785 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
87527 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401098.1 | StrainInfo: A central database for resolving microbial strain identifiers |