Strain identifier
BacDive ID: 23305
Type strain: 
Species: Streptantibioticus rubrisoli
Strain Designation: FXJ1.725
Strain history: <- Y. Huang, CAS,Bejiing, China; FXJ1.725 <- X. Guo, CAS
NCBI tax ID(s): 1387313 (species)
version 8.1 (current version)
General
@ref: 18932
BacDive-ID: 23305
DSM-Number: 42083
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Streptantibioticus rubrisoli FXJ1.725 is a mesophilic bacterium that was isolated from red soil .
NCBI tax id
- NCBI tax id: 1387313
- Matching level: species
strain history
- @ref: 18932
- history: <- Y. Huang, CAS,Bejiing, China; FXJ1.725 <- X. Guo, CAS
doi: 10.13145/bacdive23305.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptantibioticus
- species: Streptantibioticus rubrisoli
- full scientific name: Streptantibioticus rubrisoli (Guo et al. 2015) ?wiecimska et al. 2023
synonyms
- @ref: 20215
- synonym: Streptomyces rubrisoli
@ref: 18932
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces rubrisoli
full scientific name: Streptomyces rubrisoli Guo et al. 2015
strain designation: FXJ1.725
type strain: yes
Morphology
multimedia
- @ref: 18932
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42083.jpg
- caption: Medium 84 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18932 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
| 18932 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 18932
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 18932
- sample type: red soil (Ferric Acrisol)
- geographic location: Jiangxi Province, Red Soil Ecology Experimental Station of the Chinese Academy of Sciences, Liujiazhan (28° 15' 20'' N 116° 55' 30''E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 28.2556
- longitude: 116.925
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 18932
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18932
- description: Streptomyces rubrisoli strain FXJ1.725 16S ribosomal RNA gene, partial sequence
- accession: KC137300
- length: 1490
- database: ena
- NCBI tax ID: 1387313
Genome sequences
- @ref: 66792
- description: Streptantibioticus rubrisoli DSM 42083
- accession: GCA_024436055
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1387313
GC content
- @ref: 18932
- GC-content: 72.9
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 98.337 | no |
| gram-positive | yes | 89.812 | no |
| anaerobic | no | 98.943 | no |
| aerobic | yes | 91.546 | no |
| halophile | no | 93.92 | no |
| spore-forming | yes | 89.687 | no |
| motile | no | 94.746 | no |
| glucose-ferment | no | 89.629 | no |
| thermophile | no | 94.641 | yes |
| glucose-util | yes | 89.305 | no |
External links
@ref: 18932
culture collection no.: DSM 42083, CGMCC 4.7025
straininfo link
- @ref: 87523
- straininfo: 402694
literature
- topic: Phylogeny
- Pubmed-ID: 26297487
- title: Streptomyces rubrisoli sp. nov., neutrotolerant acidophilic actinomycetes isolated from red soil.
- authors: Guo X, Zhang L, Li X, Gao Y, Ruan J, Huang Y
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000383
- year: 2015
- mesh: Actinobacteria/genetics, Actinomyces/genetics, Actinomycetales/classification, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Soil, Soil Microbiology, *Streptomyces/classification
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18932 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42083) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42083 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 87523 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402694.1 | StrainInfo: A central database for resolving microbial strain identifiers |