Strain identifier
BacDive ID: 23304
Type strain:
Species: Streptomyces tsukubensis
Strain Designation: 9993
Strain history: <- H. Muramatsu, Astellas Research Technologies Co., Ltd., Japan; 9993 <- M. Iwami
NCBI tax ID(s): 83656 (species)
General
@ref: 18931
BacDive-ID: 23304
DSM-Number: 42081
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces tsukubensis 9993 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 83656
- Matching level: species
strain history
- @ref: 18931
- history: <- H. Muramatsu, Astellas Research Technologies Co., Ltd., Japan; 9993 <- M. Iwami
doi: 10.13145/bacdive23304.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces tsukubensis
- full scientific name: Streptomyces tsukubensis Muramatsu and Nagai 2013
synonyms
- @ref: 20215
- synonym: Streptomyces tsukubaensis
@ref: 18931
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces tsukubensis
full scientific name: Streptomyces tsukubensis Muramatsu and Nagai 2013
strain designation: 9993
type strain: yes
Morphology
multimedia
- @ref: 18931
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42081.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
18931 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf | |
18931 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 18931
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 18931
- compound: tacrolimus
Isolation, sampling and environmental information
isolation
- @ref: 18931
- sample type: soil
- geographic location: Ibaraki, Mt. Tsukuba
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 18931
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18931
- description: Streptomyces tsukubensis gene for 16S rRNA, partial sequence, strain:9993
- accession: AB217600
- length: 1479
- database: ena
- NCBI tax ID: 83656
GC content
- @ref: 18931
- GC-content: 72.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 18931
culture collection no.: DSM 42081, NBRC 108919
straininfo link
- @ref: 87522
- straininfo: 398128
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
18931 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42081) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42081 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
87522 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398128.1 | StrainInfo: A central database for resolving microbial strain identifiers |