Strain identifier

BacDive ID: 23304

Type strain: Yes

Species: Streptomyces tsukubensis

Strain Designation: 9993

Strain history: <- H. Muramatsu, Astellas Research Technologies Co., Ltd., Japan; 9993 <- M. Iwami

NCBI tax ID(s): 83656 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18931

BacDive-ID: 23304

DSM-Number: 42081

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces tsukubensis 9993 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 83656
  • Matching level: species

strain history

  • @ref: 18931
  • history: <- H. Muramatsu, Astellas Research Technologies Co., Ltd., Japan; 9993 <- M. Iwami

doi: 10.13145/bacdive23304.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces tsukubensis
  • full scientific name: Streptomyces tsukubensis Muramatsu and Nagai 2013
  • synonyms

    • @ref: 20215
    • synonym: Streptomyces tsukubaensis

@ref: 18931

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces tsukubensis

full scientific name: Streptomyces tsukubensis Muramatsu and Nagai 2013

strain designation: 9993

type strain: yes

Morphology

multimedia

  • @ref: 18931
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42081.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18931STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf
18931GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 18931
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

compound production

  • @ref: 18931
  • compound: tacrolimus

Isolation, sampling and environmental information

isolation

  • @ref: 18931
  • sample type: soil
  • geographic location: Ibaraki, Mt. Tsukuba
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 18931
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18931
  • description: Streptomyces tsukubensis gene for 16S rRNA, partial sequence, strain:9993
  • accession: AB217600
  • length: 1479
  • database: ena
  • NCBI tax ID: 83656

GC content

  • @ref: 18931
  • GC-content: 72.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 18931

culture collection no.: DSM 42081, NBRC 108919

straininfo link

  • @ref: 87522
  • straininfo: 398128

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18931Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42081)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42081
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
87522Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398128.1StrainInfo: A central database for resolving microbial strain identifiers