Strain identifier

BacDive ID: 23302

Type strain: Yes

Species: Streptomyces chilikensis

Strain Designation: RC1830

Strain history: V. Raina RC 1830.

NCBI tax ID(s): 1194079 (species)

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General

@ref: 18929

BacDive-ID: 23302

DSM-Number: 42072

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, ovoid-shaped

description: Streptomyces chilikensis RC1830 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from estuarine brackish water sediment from a boat dockyard.

NCBI tax id

  • NCBI tax id: 1194079
  • Matching level: species

strain history

@refhistory
18929<- V. Raina, School of Biotechnology Kiit Univ. Odisha, India; RC1830 <- L. Ray, KIIT Univ., India
67770V. Raina RC 1830.

doi: 10.13145/bacdive23302.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces chilikensis
  • full scientific name: Streptomyces chilikensis Ray et al. 2013

@ref: 18929

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces chilikensis

full scientific name: Streptomyces sp.

strain designation: RC1830

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30864positive1.4 µm1 µmovoid-shapedno
69480no91.696
69480positive100

pigmentation

  • @ref: 30864
  • production: yes

multimedia

  • @ref: 18929
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42072.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30864positivegrowth28-40
30864positiveoptimum30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30864positivegrowth06-10alkaliphile
30864positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 30864
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30864yes
69481yes100
69480yes99.999

halophily

@refsaltgrowthtested relationconcentration
30864NaClpositivegrowth02-12 %
30864NaClpositiveoptimum8 %

observation

@refobservation
30864aggregates in chains
67770quinones: MK-9(H6), MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3086422599arabinose+carbon source
3086417057cellobiose+carbon source
3086428757fructose+carbon source
3086428260galactose+carbon source
3086417234glucose+carbon source
3086417306maltose+carbon source
3086437684mannose+carbon source
3086416634raffinose+carbon source
3086426546rhamnose+carbon source
3086417992sucrose+carbon source
3086418222xylose+carbon source

enzymes

@refvalueactivityec
30864catalase+1.11.1.6
30864gelatinase+
30864cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
18929estuarine brackish water sediment from a boat dockyardOdisha, District Khurdha, Chilika Lake, Chandraput (19° 71' N and 85° 19' E)IndiaINDAsia20.183385.3167
67770Estuarine brackish water sediment samples from a boat dockyard of Chilika LakeOdishaIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Brackish
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 18929
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18929
  • description: Streptomyces chilikensis strain RC 1830 16S ribosomal RNA gene, partial sequence
  • accession: JN050256
  • length: 1491
  • database: ena
  • NCBI tax ID: 1194079

Genome sequences

  • @ref: 67770
  • description: Streptomyces chilikensis RC 1830
  • accession: GCA_001642695
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 1194079

GC content

@refGC-contentmethod
1892966.8thermal denaturation, midpoint method (Tm)
3086466.8

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.058no
flagellatedno98.058no
gram-positiveyes90.73no
gram-positiveyes90.73no
anaerobicno98.564yes
anaerobicno98.564yes
aerobicyes92.896yes
aerobicyes92.896yes
halophileno91.765yes
halophileno91.765yes
spore-formingyes97.013yes
spore-formingyes97.013yes
glucose-utilyes88.683no
glucose-utilyes88.683no
motileno96.128yes
motileno96.128yes
thermophileno98.015no
thermophileno98.015no
glucose-fermentno88.549no
glucose-fermentno88.549no

External links

@ref: 18929

culture collection no.: DSM 42072, JCM 18411

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23291893Streptomyces chilikensis sp. nov., a halophilic streptomycete isolated from brackish water sediment.Ray L, Suar M, Pattnaik AK, Raina VInt J Syst Evol Microbiol10.1099/ijs.0.046284-02013Bacterial Typing Techniques, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Geologic Sediments/*microbiology, India, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/analysisGenetics
Enzymology30775271Purification and characterization of an extracellular thermo-alkali stable, metal tolerant chitinase from Streptomyces chilikensis RC1830 isolated from a brackish water lake sediment.Ray L, Panda AN, Mishra SR, Pattanaik AK, Adhya TK, Suar M, Raina VBiotechnol Rep (Amst)10.1016/j.btre.2019.e003112019
35547016Exploration of genomic and functional features of chitinolytic bacterium Streptomyces chilikensis RC1830, isolated from Chilika Lake, India.Tanaya Behera H, Mojumdar A, Kumari K, Kumar Gouda S, Das S, Ray L3 Biotech10.1007/s13205-022-03184-52022
35972435Biocontrol of wilt disease of rice seedlings incited by Fusarium oxysporum through soil application of Streptomyces chilikensis RC1830.Behera HT, Mojumdar A, Behera SS, Das S, Ray LLett Appl Microbiol10.1111/lam.138072022*Fusarium, Seedlings/microbiology, *Oryza, Soil, Antifungal Agents/pharmacology, Charcoal, Plant Diseases/prevention & control/microbiology, *Streptomyces

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18929Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42072)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42072
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30864Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2719428776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1