Strain identifier
BacDive ID: 23298
Type strain:
Species: Streptococcus danieliae
Strain Designation: ERD01G
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; ERD01G
NCBI tax ID(s): 747656 (species)
General
@ref: 19213
BacDive-ID: 23298
DSM-Number: 22233
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Streptococcus danieliae ERD01G is a microaerophile, mesophilic bacterium that was isolated from cecal content of a male TNFdelta ARE mouse.
NCBI tax id
- NCBI tax id: 747656
- Matching level: species
strain history
- @ref: 19213
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; ERD01G
doi: 10.13145/bacdive23298.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus danieliae
- full scientific name: Streptococcus danieliae Clavel et al. 2013
@ref: 19213
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus danieliae
full scientific name: Streptococcus danieliae Clavel et al. 2013
strain designation: ERD01G
type strain: yes
Morphology
colony morphology
@ref | incubation period | type of hemolysis | hemolysis ability |
---|---|---|---|
19213 | 3-7 days | ||
61404 | 1 day | ||
68370 | beta | 1 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
19213 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
19213 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19213 | positive | growth | 37 | mesophilic |
61404 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
19213 | microaerophile |
61404 | microaerophile |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68370 | 28087 | glycogen | - | builds acid from |
68370 | 28017 | starch | - | builds acid from |
68370 | 16634 | raffinose | - | builds acid from |
68370 | 15443 | inulin | - | builds acid from |
68370 | 27082 | trehalose | - | builds acid from |
68370 | 17716 | lactose | - | builds acid from |
68370 | 17924 | D-sorbitol | - | builds acid from |
68370 | 16899 | D-mannitol | - | builds acid from |
68370 | 30849 | L-arabinose | - | builds acid from |
68370 | 16988 | D-ribose | - | builds acid from |
68370 | 29016 | arginine | - | hydrolysis |
68370 | 4853 | esculin | - | hydrolysis |
68370 | 606565 | hippurate | - | hydrolysis |
68381 | 29016 | arginine | - | hydrolysis |
68381 | 16988 | D-ribose | - | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | - | builds acid from |
68381 | 27082 | trehalose | + | builds acid from |
68381 | 16634 | raffinose | - | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 606565 | hippurate | - | hydrolysis |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
68381 | 16443 | D-tagatose | - | builds acid from |
68381 | 16199 | urea | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68370 | 15688 | acetoin | no |
68381 | 15688 | acetoin | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test |
---|---|---|---|
68381 | 15688 | acetoin | - |
68370 | 15688 | acetoin | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | - | |
68381 | alkaline phosphatase | - | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | - | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
68370 | arginine dihydrolase | - | 3.5.3.6 |
68370 | leucine arylamidase | + | 3.4.11.1 |
68370 | alkaline phosphatase | + | 3.1.3.1 |
68370 | beta-galactosidase | - | 3.2.1.23 |
68370 | beta-glucuronidase | - | 3.2.1.31 |
68370 | alpha-galactosidase | - | 3.2.1.22 |
68370 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68370 | beta-glucosidase | - | 3.2.1.21 |
API 20STR
@ref | VP | HIP | ESC | PYRA | alpha GAL | beta GUR | beta GAL | PAL | LAP | ADH | RIB | ARA | MAN | SOR | LAC | TRE | INU | RAF | AMD | GLYG | beta HEM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19213 | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | + |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19213 | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
19213 | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | - | - | - | - | + | - | - | +/- | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date | geographic location |
---|---|---|---|---|---|---|
19213 | cecal content of a male TNFdelta ARE mouse | Germany | DEU | Europe | ||
61404 | Mouse caecum,male TNFdeltaARE | Germany | DEU | Europe | 2008-10-27 | Freising-Weihenstephan |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Muridae (Mouse/Rat) |
#Host Body Product | #Gastrointestinal tract | #Caecal content |
taxonmaps
- @ref: 69479
- File name: preview.99_14158.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_7276;97_8724;98_10694;99_14158&stattab=map
- Last taxonomy: Streptococcus
- 16S sequence: GQ456229
- Sequence Identity:
- Total samples: 32893
- soil counts: 358
- aquatic counts: 392
- animal counts: 32049
- plant counts: 94
Safety information
risk assessment
- @ref: 19213
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19213
- description: Streptococcus danieliae strain ERD01G 16S ribosomal RNA gene, partial sequence
- accession: GQ456229
- length: 1419
- database: ena
- NCBI tax ID: 747656
Genome sequences
- @ref: 66792
- description: Streptococcus danieliae DSM 22233
- accession: GCA_025447695
- assembly level: contig
- database: ncbi
- NCBI tax ID: 747656
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 95.504 | no |
flagellated | no | 98.475 | no |
gram-positive | yes | 95.705 | no |
anaerobic | no | 95.245 | yes |
aerobic | no | 96.365 | yes |
halophile | yes | 84.12 | no |
spore-forming | no | 95.391 | no |
glucose-ferment | yes | 85.893 | no |
thermophile | no | 97.562 | yes |
glucose-util | yes | 91.159 | no |
External links
@ref: 19213
culture collection no.: DSM 22233, CCUG 57647
straininfo link
- @ref: 87517
- straininfo: 402639
literature
- topic: Phylogeny
- Pubmed-ID: 23052149
- title: Streptococcus danieliae sp. nov., a novel bacterium isolated from the caecum of a mouse.
- authors: Clavel T, Charrier C, Haller D
- journal: Arch Microbiol
- DOI: 10.1007/s00203-012-0846-6
- year: 2012
- mesh: Animals, Base Sequence, Cecum/*microbiology, DNA, Bacterial/genetics, Genotype, Male, Mice, Mice, Inbred C57BL, Microscopy, Phase-Contrast, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity, Streptococcus/*classification/cytology/genetics/isolation & purification, Urease/genetics, alpha-Galactosidase/genetics
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
19213 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22233) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22233 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
61404 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 57647) | https://www.ccug.se/strain?id=57647 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68370 | Automatically annotated from API 20STR | |||
68381 | Automatically annotated from API rID32STR | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
87517 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402639.1 | StrainInfo: A central database for resolving microbial strain identifiers |