Strain identifier
BacDive ID: 23289
Type strain: 
Species: Jeotgalicoccus aerolatus
Strain Designation: C1-52
Strain history: <- NBRC <- CGMCC 1.8911 <- S. S. Yang, China Agric. Univ., College Biol. Sci., Beijing; C1-52
NCBI tax ID(s): 709510 (species)
version 8.1 (current version)
General
@ref: 19119
BacDive-ID: 23289
DSM-Number: 27396
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Jeotgalicoccus aerolatus C1-52 is a mesophilic bacterium that was isolated from soil near a salt lake.
NCBI tax id
- NCBI tax id: 709510
- Matching level: species
strain history
- @ref: 19119
- history: <- NBRC <- CGMCC 1.8911 <- S. S. Yang, China Agric. Univ., College Biol. Sci., Beijing; C1-52
doi: 10.13145/bacdive23289.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Jeotgalicoccus
- species: Jeotgalicoccus aerolatus
- full scientific name: Jeotgalicoccus aerolatus Martin et al. 2011
synonyms
- @ref: 20215
- synonym: Jeotgalicoccus halophilus
@ref: 19119
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Staphylococcaceae
genus: Jeotgalicoccus
species: Jeotgalicoccus halophilus
full scientific name: Jeotgalicoccus halophilus Liu et al. 2011
strain designation: C1-52
type strain: yes
Culture and growth conditions
culture medium
- @ref: 19119
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 19119
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 19119
- sample type: soil near a salt lake
- geographic location: Xinjiang
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 19119
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19119
- description: Jeotgalicoccus halophilus strain C1-52 16S ribosomal RNA gene, partial sequence
- accession: FJ386517
- length: 1457
- database: ena
- NCBI tax ID: 586411
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Jeotgalicoccus aerolatus CGMCC 1.8911 | GCA_900101065 | scaffold | ncbi | 709510 |
| 66792 | Jeotgalicoccus halophilus strain CGMCC 1.8911 | 586411.3 | wgs | patric | 709510 |
| 66792 | Jeotgalicoccus halophilus CGMCC 1.8911 | 2663762720 | draft | img | 586411 |
GC content
- @ref: 19119
- GC-content: 41
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 87.641 | no |
| flagellated | no | 93.956 | no |
| gram-positive | yes | 92.048 | no |
| anaerobic | no | 99.243 | no |
| aerobic | yes | 95.7 | no |
| halophile | yes | 97.401 | no |
| spore-forming | no | 89.309 | no |
| glucose-ferment | no | 71.645 | no |
| thermophile | no | 99.892 | yes |
| glucose-util | yes | 81.705 | no |
External links
@ref: 19119
culture collection no.: DSM 27396, CGMCC 1.8911, NBRC 105788
straininfo link
- @ref: 87510
- straininfo: 397871
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20802063 | Jeotgalicoccus halophilus sp. nov., isolated from salt lakes. | Liu WY, Jiang LL, Guo CJ, Yang SS | Int J Syst Evol Microbiol | 10.1099/ijs.0.022251-0 | 2010 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Staphylococcaceae/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 33724175 | Jeotgalicoccus meleagridis sp. nov. isolated from bioaerosol from emissions of a turkey fattening plant and reclassification of Jeotgalicoccus halophilus Liu et al. 2011 as a later heterotypic synonym of Jeotgalicoccus aerolatus Martin et al. 2011. | Kampfer P, Busse HJ, Glaeser SP, Clermont D, Criscuolo A, Mietke H | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004745 | 2021 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19119 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27396) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27396 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 87510 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397871.1 | StrainInfo: A central database for resolving microbial strain identifiers |