Strain identifier

BacDive ID: 23288

Type strain: Yes

Species: Treponema maltophilum

Strain Designation: BR

Strain history: CIP <- 1997, C. Wyss, Zürich Univ., Switzerland: strain OMZ 679

NCBI tax ID(s): 1125699 (strain), 51160 (species)

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General

@ref: 19045

BacDive-ID: 23288

DSM-Number: 27366

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Treponema maltophilum BR is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human periodontal lesions.

NCBI tax id

NCBI tax idMatching level
1125699strain
51160species

strain history

@refhistory
19045<- CIP <- C. Wyss; OMZ 679
372051997, C. Wyss, Zürich Univ., Switzerland: strain OMZ 679
120773CIP <- 1997, C. Wyss, Zürich Univ., Switzerland: strain OMZ 679

doi: 10.13145/bacdive23288.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Spirochaetales
  • family: Treponemataceae
  • genus: Treponema
  • species: Treponema maltophilum
  • full scientific name: Treponema maltophilum Wyss et al. 1996

@ref: 19045

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetia

order: Spirochaetales

family: Treponemataceae

genus: Treponema

species: Treponema maltophilum

full scientific name: Treponema maltophilum Wyss et al. 1996

strain designation: BR

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.947

colony morphology

  • @ref: 19045
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
19045OMIZ-PAT (DSMZ Medium 1494)yeshttps://mediadive.dsmz.de/medium/1494Name: . OMIZ-PAT Medium (modified) (DSMZ Medium 1494) Composition: (NH4)6Mo7O24 x 4 H2O 12.4 g/l Yeast extract 3.0 g/l Fe SO4 x 7 H2O 2.78015 g/l D-Glucose 2.0 g/l D-Mannose 2.0 g/l D-Arabinose 2.0 g/l L-Fucose 2.0 g/l D-Trehalose 2.0 g/l D-Sucrose 2.0 g/l L-Rhamnose 2.0 g/l NH4Cl 1.6 g/l Glutathione 1.5366 g/l Ascorbic acid 1.0 g/l NaHCO3 1.0 g/l Ethanol 1.0 g/l KCl 0.968 g/l D-Maltose 0.8 g/l D-glucuronic acid 0.8 g/l D-Mannitol 0.8 g/l D-galacturonic acid 0.8 g/l D-Fructose 0.8 g/l L-Glutamine 0.68 g/l L-Histidine 0.62 g/l NaVO3 0.61 g/l D 0.56 g/l Pyruvic acid 0.55 g/l L-Serine 0.525 g/l Fumaric acid 0.5 g/l HCl 0.3646 g/l L-Cysteine HCl 0.35 g/l L-Glutamic acid 0.3 g/l Formic acid 0.3 g/l ZnSO4 x 7 H2O 0.287 g/l MgSO4 x 7 H2O 0.25 g/l DL-carnitine 0.2 g/l N-Acetylglucosamine 0.2 g/l Citric acid 0.2 g/l L-Lysine HCl 0.182 g/l L-Arginine 0.175 g/l L-Ornithine HCl 0.17 g/l L-Phenylalanine 0.165 g/l CaCl2 x H2O 0.15 g/l L-Methionine 0.15 g/l L-Asparagine 0.15 g/l NaH2PO4 x H2O 0.14 g/l L-Leucine 0.131 g/l L-Isoleucine 0.131 g/l NiSO4 x 6 H2O 0.131 g/l L-Threonine 0.12 g/l L-Aspartic acid 0.118 g/l SnCl2 x 2 H2O 0.118 g/l L-Valine 0.117 g/l L-Proline 0.115 g/l L-Tryptophan 0.102 g/l Nicotinic acid 0.1 g/l Folinic acid 0.1 g/l L-Tyrosine 0.09 g/l NaOH 0.079994 g/l Glycine 0.075 g/l Nicotinamide 0.05 g/l Folic acid 0.05 g/l D-(+)-biotin 0.05 g/l Vitamine B12 0.05 g/l Choline chloride 0.05 g/l Myo-inositol 0.05 g/l L-Alanine 0.045 g/l Hemin 0.026076 g/l N-acetylmuramic acid 0.025 g/l Na2SeO3 0.0173 g/l MnSO4 x H2O 0.0169 g/l Riboflavine 0.01 g/l 2-Mercaptoethanesulfonic acid 0.01 g/l Phenol red 0.01 g/l Putrescine 2 HCl 0.005 g/l Pyridoxal hydrochloride 0.005 g/l Pyridoxal phosphate 0.005 g/l Calcium D-(+)-pantothenate 0.005 g/l Thiamine HCl 0.005 g/l Thiamin pyrophosphate 0.005 g/l Thymidine 0.0024 g/l N-(2-acetamido)-2-aminoethanesulfonic acid 0.0018 g/l Hypoxanthine 0.0014 g/l Uracil 0.0011 g/l Flavin adenine dinucleotide 0.001 g/l ß-nicotinamide adenine dinucleotide 0.001 g/l Coenzym A 0.001 g/l CuSO4 0.000789 g/l Cholesterol Asialofetuin 2-Mercaptoethanol Isovaleric acid Valeric acid 2-Methylbutyric acid Isobutyric acid DL-alpha-lipoic acid Rabbit serum Distilled water
37205MEDIUM 155 - for Treponema maltophilumyesDistilled water make up to (67.000 ml);Sodium chloride (2.500 g);Maltose(2.000 g);Horse serum (333.000 ml);Agar (0.150 g);Yeast extract (5.000 g);Potato dextrose broth (5.000 g);N-Acetyl glucosamine (0.200 g);Sodium thyoglycolate (0.500 g);L-Cysteine (1.0
120773CIP Medium 155yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=155

culture temp

@refgrowthtypetemperaturerange
19045positivegrowth37mesophilic
37205positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
19045anaerobe
69480anaerobe99.211

spore formation

@refspore formationconfidence
69481no100
69480no99.996

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
19045human periodontal lesionsSwitzerlandCHEEurope
120773Subgingival plaqueSwitzerlandCHEEurope1992

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Mouth
#Host Body-Site#Other#Wound

taxonmaps

  • @ref: 69479
  • File name: preview.99_2227.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_304;96_1206;97_1427;98_1737;99_2227&stattab=map
  • Last taxonomy: Treponema maltophilum subclade
  • 16S sequence: X87140
  • Sequence Identity:
  • Total samples: 2889
  • soil counts: 32
  • aquatic counts: 60
  • animal counts: 2778
  • plant counts: 19

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
190452Risk group (German classification)
1207732Risk group (French classification)

Sequence information

16S sequences

  • @ref: 19045
  • description: Treponema maltophilum 16S rRNA gene (patient BR)
  • accession: X87140
  • length: 1497
  • database: ena
  • NCBI tax ID: 51160

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Treponema maltophilum ATCC 51939GCA_000413055scaffoldncbi1125699
66792Treponema maltophilum ATCC 519391125699.3wgspatric1125699
66792Treponema maltophilum ATCC 519392541046974draftimg1125699

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes80.57no
flagellatedno84.672no
gram-positiveno95.142no
anaerobicyes99.332yes
aerobicno98.889no
halophileno78.196no
spore-formingno91.569no
thermophileno93.046yes
glucose-utilyes76.115no
glucose-fermentyes75.912no

External links

@ref: 19045

culture collection no.: DSM 27366, ATCC 51939, CIP 105146, OMZ 679

straininfo link

  • @ref: 87509
  • straininfo: 43254

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology9922270Cloning and characterization of a gene (mspA) encoding the major sheath protein of Treponema maltophilum ATCC 51939(T).Heuner K, Choi BK, Schade R, Moter A, Otto A, Gobel UBJ Bacteriol10.1128/JB.181.3.1025-1029.19991999Antigens, Surface/biosynthesis/genetics, Base Sequence, Electrophoresis, Polyacrylamide Gel, Membrane Proteins/biosynthesis/*genetics/isolation & purification, Molecular Sequence Data, Molecular Weight, Open Reading Frames, Phylogeny, Restriction Mapping, Treponema/*genetics/metabolismPhylogeny
Metabolism10708388A flagellar gene cluster from the oral spirochaete Treponema maltophilum.Heuner K, Grosse K, Schade R, Gobel UBMicrobiology (Reading)10.1099/00221287-146-2-4972000Bacterial Proteins/*genetics/metabolism, Base Sequence, Blotting, Northern, Cloning, Molecular, DNA Primers, Flagella/*genetics/metabolism, Flagellin/*genetics/metabolism, Gene Expression Regulation, Bacterial, *Genes, Bacterial, Molecular Sequence Data, Multigene Family, Open Reading Frames, Promoter Regions, Genetic, Sequence Analysis, DNA, Sigma Factor/*genetics/metabolism, Transcription, Genetic, Treponema/*genetics/metabolismEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
19045Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27366)https://www.dsmz.de/collection/catalogue/details/culture/DSM-27366
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37205Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17133
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
87509Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43254.1StrainInfo: A central database for resolving microbial strain identifiers
120773Curators of the CIPCollection of Institut Pasteur (CIP 105146)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105146