Strain identifier
BacDive ID: 23279
Type strain:
Species: Sphingomonas polyaromaticivorans
Strain Designation: B2-7
Strain history: Y. Luo B2-7.
NCBI tax ID(s): 433606 (species)
General
@ref: 19150
BacDive-ID: 23279
DSM-Number: 27062
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Sphingomonas polyaromaticivorans B2-7 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from water of oil port.
NCBI tax id
- NCBI tax id: 433606
- Matching level: species
strain history
@ref | history |
---|---|
19150 | <- JCM <- Y. Luo, Marine Biotechnology Research Center, Ansan, Korea; B2-7 |
67770 | Y. Luo B2-7. |
doi: 10.13145/bacdive23279.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas polyaromaticivorans
- full scientific name: Sphingomonas polyaromaticivorans Luo et al. 2012
@ref: 19150
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas polyaromaticivorans
full scientific name: Sphingomonas polyaromaticivorans Luo et al. 2012
strain designation: B2-7
type strain: yes
Morphology
cell morphology
- @ref: 30326
- gram stain: negative
- cell length: 1.5 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30326
- production: yes
multimedia
- @ref: 19150
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27062.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 19150
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19150 | positive | growth | 28 | mesophilic |
30326 | positive | growth | 20-35 | |
30326 | positive | optimum | 26 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30326 | positive | growth | 4-7.5 | acidophile |
30326 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30326
- oxygen tolerance: aerobe
halophily
- @ref: 30326
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 0.50 %
observation
- @ref: 67770
- observation: quinones: Q-10
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30326 | 30089 | acetate | + | carbon source |
30326 | 21217 | L-alaninamide | + | carbon source |
30326 | 16449 | alanine | + | carbon source |
30326 | 28644 | 2-oxopentanoate | + | carbon source |
30326 | 22599 | arabinose | + | carbon source |
30326 | 22653 | asparagine | + | carbon source |
30326 | 35391 | aspartate | + | carbon source |
30326 | 17057 | cellobiose | + | carbon source |
30326 | 23652 | dextrin | + | carbon source |
30326 | 15740 | formate | + | carbon source |
30326 | 28757 | fructose | + | carbon source |
30326 | 28260 | galactose | + | carbon source |
30326 | 17234 | glucose | + | carbon source |
30326 | 29987 | glutamate | + | carbon source |
30326 | 17754 | glycerol | + | carbon source |
30326 | 27570 | histidine | + | carbon source |
30326 | 18240 | 4-hydroxy-L-proline | + | carbon source |
30326 | 17716 | lactose | + | carbon source |
30326 | 25017 | leucine | + | carbon source |
30326 | 17306 | maltose | + | carbon source |
30326 | 37684 | mannose | + | carbon source |
30326 | 37657 | methyl D-glucoside | + | carbon source |
30326 | 51850 | methyl pyruvate | + | carbon source |
30326 | 28044 | phenylalanine | + | carbon source |
30326 | 26271 | proline | + | carbon source |
30326 | 17822 | serine | + | carbon source |
30326 | 17992 | sucrose | + | carbon source |
30326 | 26986 | threonine | + | carbon source |
30326 | 27082 | trehalose | + | carbon source |
30326 | 53423 | tween 40 | + | carbon source |
30326 | 53426 | tween 80 | + | carbon source |
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
30326 | acid phosphatase | + | 3.1.3.2 |
30326 | alkaline phosphatase | + | 3.1.3.1 |
30326 | catalase | + | 1.11.1.6 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19150 | - | - | - | - | - | + | - | - | + | + | + | - | - | - | - | - | - | - | - | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
19150 | water of oil port | Xiamen, Botan Oil Port | China | CHN | Asia |
67770 | Water sample from Botan Oil Port in Xiamen | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | #Oil reservoir |
#Environmental | #Aquatic |
Safety information
risk assessment
- @ref: 19150
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19150
- description: Sphingomonas polyaromaticivorans strain B2-7 16S ribosomal RNA gene, partial sequence
- accession: EF467848
- length: 1450
- database: ena
- NCBI tax ID: 433606
GC content
@ref | GC-content | method |
---|---|---|
19150 | 61.8 | |
67770 | 61.8 | high performance liquid chromatography (HPLC) |
External links
@ref: 19150
culture collection no.: DSM 27062, JCM 16711, KCCM 42951
straininfo link
- @ref: 87501
- straininfo: 406281
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21742816 | Sphingomonas polyaromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium from an oil port water sample. | Luo YR, Tian Y, Huang X, Kwon K, Yang SH, Seo HS, Kim SJ, Zheng TL | Int J Syst Evol Microbiol | 10.1099/ijs.0.033530-0 | 2011 | Bacterial Typing Techniques, Biodegradation, Environmental, China, DNA, Bacterial/genetics, Molecular Sequence Data, Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Sphingomonas/*classification/genetics/*isolation & purification/metabolism, *Water Microbiology | Genetics |
Phylogeny | 24523444 | Sphingomonas oligoaromativorans sp. nov., an oligotrophic bacterium isolated from a forest soil. | Han SI, Lee JC, Ohta H, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.052894-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Trees/microbiology, Ubiquinone/chemistry | Genetics |
Phylogeny | 25985831 | Sphingomonas morindae sp. nov., isolated from Noni (Morinda citrifolia L.) branch. | Liu Y, Yao S, Lee YJ, Cao Y, Zhai L, Zhang X, Su J, Ge Y, Kim SG, Cheng C | Int J Syst Evol Microbiol | 10.1099/ijs.0.000340 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Endophytes/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Molecular Sequence Data, Morinda/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry | Enzymology |
Phylogeny | 29091024 | Sphingomonas difficilis sp. nov., a difficultly cultivable bacterium that grows on solid but not in liquid medium, isolated from an abandoned lead-zinc mine. | Feng GD, Xiong X, Zhu HH, Li HP | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002461 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, *Mining, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry, *Zinc | Transcriptome |
Phylogeny | 32515726 | Sphingomonas chungangi sp. nov., a bacterium isolated from garden soil sample. | Akter S, Huq MA | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004267 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Gardens, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Sphingomonas/*classification/isolation & purification, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
19150 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27062) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27062 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30326 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26667 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68369 | Automatically annotated from API 20NE | |||||
87501 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406281.1 | StrainInfo: A central database for resolving microbial strain identifiers |