Strain identifier
BacDive ID: 23251
Type strain:
Species: Anaerocella delicata
Strain Designation: WN081
Strain history: A. Ueki; Fac. of Agric., Yamagata Univ., Japan; WN081.
NCBI tax ID(s): 433338 (species)
General
@ref: 19274
BacDive-ID: 23251
DSM-Number: 23595
keywords: 16S sequence, Bacteria, anaerobe, psychrophilic
description: Anaerocella delicata WN081 is an anaerobe, psychrophilic bacterium that was isolated from methanogenic reactor of cattle waste.
NCBI tax id
- NCBI tax id: 433338
- Matching level: species
strain history
@ref | history |
---|---|
19274 | <- A. Ueki, Yamagata Univ., Tsuruoka, Japan; WN081 <- A. Ueki |
67770 | A. Ueki; Fac. of Agric., Yamagata Univ., Japan; WN081. |
doi: 10.13145/bacdive23251.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Rikenellaceae
- genus: Anaerocella
- species: Anaerocella delicata
- full scientific name: Anaerocella delicata Abe et al. 2013
@ref: 19274
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Rikenellaceae
genus: Anaerocella
species: Anaerocella delicata
full scientific name: Anaerocella delicata Abe et al. 2013
strain designation: WN081
type strain: yes
Morphology
colony morphology
- @ref: 19274
- incubation period: >14 days
Culture and growth conditions
culture medium
- @ref: 19274
- name: ANAEROCELLA MEDIUM (DSMZ Medium 1281)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1281
- composition: Name: ANAEROCELLA MEDIUM (DSMZ Medium 1281) Composition: Agar 15.0 g/l Trypticase 10.0 g/l Yeast extract 5.0 g/l (NH4)2SO4 0.9 g/l NaCl 0.9 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l L-Cysteine HCl x H2O 0.3 g/l Glucose 0.25 g/l Cellobiose 0.25 g/l Maltose 0.25 g/l Starch 0.25 g/l Na2CO3 0.2 g/l CaCl2 x 2 H2O 0.09 g/l MgSO4 x 7 H2O 0.09 g/l Resazurin 0.001 g/l Pyridoxine hydrochloride 0.0003 g/l Nicotinic acid 0.0002 g/l Thiamine-HCl x 2 H2O 0.0002 g/l Calcium pantothenate 0.0001 g/l Vitamin B12 0.0001 g/l p-Aminobenzoic acid 8e-05 g/l D-(+)-biotin 2e-05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19274 | positive | growth | 20 | psychrophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 19274
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
19274 | methanogenic reactor of cattle waste | Hokkaido | Japan | JPN | Asia |
67770 | Rice-straw residue in a methanogenic reactor treating waste from cattle farms | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Bioreactor | |
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_150221.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1554;96_21768;97_27173;98_43943;99_150221&stattab=map
- Last taxonomy: Anaerocella delicata subclade
- 16S sequence: AB298736
- Sequence Identity:
- Total samples: 6
- soil counts: 1
- aquatic counts: 3
- animal counts: 2
Safety information
risk assessment
- @ref: 19274
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19274
- description: Anaerocella delicata gene for 16S rRNA, partial sequence
- accession: AB298736
- length: 1451
- database: ena
- NCBI tax ID: 433338
GC content
- @ref: 19274
- GC-content: 32.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 19274
culture collection no.: DSM 23595, JCM 17049
straininfo link
- @ref: 87474
- straininfo: 402616
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 23337575 | Anaerocella delicata gen. nov., sp. nov., a strictly anaerobic bacterium in the phylum Bacteroidetes isolated from a methanogenic reactor of cattle farms. | Abe K, Ueki A, Ohtaki Y, Kaku N, Watanabe K, Ueki K | J Gen Appl Microbiol | 10.2323/jgam.58.405 | 2012 | Anaerobiosis, Animal Husbandry, Animals, Bacteria, Anaerobic/classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Base Composition, Bioreactors/*microbiology, Cattle, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Japan, Methane/*metabolism, Molecular Sequence Data, Oryza/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Enzymology |
Phylogeny | 24899658 | Acetobacteroides hydrogenigenes gen. nov., sp. nov., an anaerobic hydrogen-producing bacterium in the family Rikenellaceae isolated from a reed swamp. | Su XL, Tian Q, Zhang J, Yuan XZ, Shi XS, Guo RB, Qiu YL | Int J Syst Evol Microbiol | 10.1099/ijs.0.063917-0 | 2014 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hydrogen/metabolism, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology, *Wetlands | Genetics |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
19274 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23595) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23595 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
87474 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402616.1 | StrainInfo: A central database for resolving microbial strain identifiers |