Strain identifier
BacDive ID: 23235
Type strain:
Species: Palleronia salina
Strain Designation: CL-SP27
Strain history: CIP <- 2007, JCM <- 2005, D. H. Choi, Seoul Nat. Univ, Seoul, Korea: strain CL-SP27
NCBI tax ID(s): 313368 (species)
General
@ref: 19056
BacDive-ID: 23235
DSM-Number: 26892
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Palleronia salina CL-SP27 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from hypersaline water from solar saltern.
NCBI tax id
- NCBI tax id: 313368
- Matching level: species
strain history
@ref | history |
---|---|
19056 | <- JCM <- D. H. Choi; CL-SP27 |
67770 | D. H. Choi CL-SP27. |
122385 | CIP <- 2007, JCM <- 2005, D. H. Choi, Seoul Nat. Univ, Seoul, Korea: strain CL-SP27 |
doi: 10.13145/bacdive23235.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Palleronia
- species: Palleronia salina
- full scientific name: Palleronia salina (Choi et al. 2007) Barnier et al. 2022
synonyms
- @ref: 20215
- synonym: Maribius salinus
@ref: 19056
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Maribius
species: Maribius salinus
full scientific name: Maribius salinus Choi et al. 2007
strain designation: CL-SP27
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
31863 | negative | 2.75 µm | 1.05 µm | rod-shaped | no |
122385 | negative | rod-shaped | no |
colony morphology
- @ref: 19056
- incubation period: 2-3 days
pigmentation
- @ref: 31863
- production: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
19056 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
37760 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
122385 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19056 | positive | growth | 30 | mesophilic |
31863 | positive | growth | 10-35 | |
31863 | positive | optimum | 32.5 | mesophilic |
37760 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
31863 | positive | growth | 07-08 |
31863 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
31863 | aerobe |
122385 | facultative anaerobe |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31863 | NaCl | positive | growth | 01-10 % |
31863 | NaCl | positive | optimum | 5.5 % |
observation
- @ref: 67770
- observation: quinones: Q-10
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31863 | 29016 | arginine | + | carbon source |
31863 | 17057 | cellobiose | + | carbon source |
31863 | 16947 | citrate | + | carbon source |
31863 | 16236 | ethanol | + | carbon source |
31863 | 15740 | formate | + | carbon source |
31863 | 28757 | fructose | + | carbon source |
31863 | 25017 | leucine | + | carbon source |
31863 | 29864 | mannitol | + | carbon source |
31863 | 17268 | myo-inositol | + | carbon source |
31863 | 506227 | N-acetylglucosamine | + | carbon source |
31863 | 18257 | ornithine | + | carbon source |
31863 | 15361 | pyruvate | + | carbon source |
31863 | 16634 | raffinose | + | carbon source |
31863 | 30911 | sorbitol | + | carbon source |
31863 | 30031 | succinate | + | carbon source |
31863 | 53426 | tween 80 | + | carbon source |
31863 | 16199 | urea | + | carbon source |
31863 | 18222 | xylose | + | carbon source |
31863 | 4853 | esculin | + | hydrolysis |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | - | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | + | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | - | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
122385 | 17632 | nitrate | + | reduction |
122385 | 16301 | nitrite | - | reduction |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
122385 | 35581 | indole | no |
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
19056 | catalase | + | 1.11.1.6 |
19056 | cytochrome-c oxidase | + | 1.9.3.1 |
31863 | catalase | + | 1.11.1.6 |
31863 | cytochrome oxidase | + | 1.9.3.1 |
31863 | urease | + | 3.5.1.5 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
122385 | oxidase | - | |
122385 | catalase | + | 1.11.1.6 |
122385 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122385 | - | + | + | + | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19056 | - | - | - | - | - | + | - | + | + | - | - | - | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122385 | +/- | - | - | - | - | - | - | - | - | +/- | + | + | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | + | + | + | - | + | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | +/- |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | geographic location |
---|---|---|---|---|---|
19056 | hypersaline water from solar saltern | Republic of Korea | KOR | Asia | |
67770 | Hypersaline water from a solar saltern | Republic of Korea | KOR | Asia | |
122385 | Environment, Hypersaline water from a solar saltern | Atlantic Ocean | Sargasso Sea |
isolation source categories
Cat1 | Cat2 |
---|---|
#Environmental | #Aquatic |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_1925.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1076;97_1256;98_1510;99_1925&stattab=map
- Last taxonomy: Maribius
- 16S sequence: AY906863
- Sequence Identity:
- Total samples: 2544
- soil counts: 183
- aquatic counts: 2211
- animal counts: 107
- plant counts: 43
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
19056 | 1 | Risk group (German classification) |
122385 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 19056
- description: Maribius salinus strain CL-SP27 16S ribosomal RNA gene, partial sequence
- accession: AY906863
- length: 1385
- database: ena
- NCBI tax ID: 313368
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Maribius salinus strain DSM 26892 | 313368.3 | wgs | patric | 313368 |
66792 | Maribius salinus DSM 26892 | 2619618996 | draft | img | 313368 |
67770 | Palleronia salina DSM 26892 | GCA_900141995 | scaffold | ncbi | 313368 |
GC content
@ref | GC-content | method |
---|---|---|
19056 | 70.0 | high performance liquid chromatography (HPLC) |
31863 | 70 | |
67770 | 70 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | no | 98.674 | yes |
anaerobic | no | 97.332 | yes |
halophile | yes | 75.898 | no |
spore-forming | no | 96.026 | no |
glucose-util | yes | 83.254 | yes |
flagellated | no | 83.959 | yes |
aerobic | yes | 90.405 | yes |
thermophile | no | 97.089 | yes |
motile | yes | 58.388 | no |
glucose-ferment | no | 91.396 | yes |
External links
@ref: 19056
culture collection no.: DSM 26892, JCM 13037, KCCM 42113, CIP 109545, CECT 7800
straininfo link
- @ref: 87462
- straininfo: 297248
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 17267963 | Maribius salinus gen. nov., sp. nov., isolated from a solar saltern and Maribius pelagius sp. nov., cultured from the Sargasso Sea, belonging to the Roseobacter clade. | Choi DH, Cho JC, Lanoil BD, Giovannoni SJ, Cho BC | Int J Syst Evol Microbiol | 10.1099/ijs.0.64552-0 | 2007 | Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/chemistry, Genes, rRNA/genetics, Korea, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Roseobacter/*classification/cytology/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Water Microbiology | Genetics |
Phylogeny | 22685108 | Profundibacterium mesophilum gen. nov., sp. nov., a novel member in the family Rhodobacteraceae isolated from deep-sea sediment in the Red Sea, Saudi Arabia. | Lai PY, Miao L, Lee OO, Liu LL, Zhou XJ, Xu Y, Al-Suwailem A, Qian PY | Int J Syst Evol Microbiol | 10.1099/ijs.0.041525-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Indian Ocean, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Saudi Arabia, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analysis | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
19056 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26892) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26892 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
31863 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28123 | 28776041 | ||
37760 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7300 | |||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
68369 | Automatically annotated from API 20NE | ||||||
68371 | Automatically annotated from API 50CH acid | ||||||
68382 | Automatically annotated from API zym | ||||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
87462 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297248.1 | StrainInfo: A central database for resolving microbial strain identifiers | ||||
122385 | Curators of the CIP | Collection of Institut Pasteur (CIP 109545) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109545 |