Strain identifier
BacDive ID: 23229
Type strain: 
Species: Sulfitobacter sp.
Strain Designation: EE-36
Strain history: <- J. M. Gonzalez, Univ. of Georgia, School of Marine Programs, Athens, USA; EE-36
NCBI tax ID(s): 1903071 (species)
version 9.3 (current version)
General
@ref: 18936
BacDive-ID: 23229
DSM-Number: 11700
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Sulfitobacter sp. EE-36 is a mesophilic, Gram-negative bacterium that was isolated from salt marsh.
NCBI tax id
- NCBI tax id: 1903071
- Matching level: species
strain history
- @ref: 18936
- history: <- J. M. Gonzalez, Univ. of Georgia, School of Marine Programs, Athens, USA; EE-36
doi: 10.13145/bacdive23229.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Sulfitobacter
- species: Sulfitobacter sp.
- full scientific name: Sulfitobacter Sorokin 1996
synonyms
@ref synonym 20215 Oceanibulbus 20215 Parasulfitobacter 20215 Staleya
@ref: 18936
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Sulfitobacter
species: Sulfitobacter sp.
full scientific name: Sulfitobacter sp.
strain designation: EE-36
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 95.9 |
| 125438 | negative | 98 |
Culture and growth conditions
culture medium
- @ref: 18936
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 18936
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: aerobe
- confidence: 92.5
spore formation
- @ref: 125439
- spore formation: no
- confidence: 92.8
Isolation, sampling and environmental information
isolation
- @ref: 18936
- sample type: salt marsh
- geographic location: Georgia
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Salt marsh |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_3348.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_252;97_275;98_306;99_3348&stattab=map
- Last taxonomy: Sulfitobacter pontiacus
- 16S sequence: AF007254
- Sequence Identity:
- Total samples: 2001
- soil counts: 26
- aquatic counts: 1830
- animal counts: 141
- plant counts: 4
Sequence information
16S sequences
- @ref: 18936
- description: Sulfitobacter sp. EE-36 16S ribosomal RNA gene, partial sequence
- accession: AF007254
- length: 1376
- database: nuccore
- NCBI tax ID: 52598
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sulfitobacter sp. EE-36 | GCA_000152605 | scaffold | ncbi | 52598 |
| 66792 | Sulfitobacter sp. EE-36 | 52598.8 | wgs | patric | 52598 |
| 66792 | Sulfitobacter sp. EE-36 | 638341211 | draft | img | 52598 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.364 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.314 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.491 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.723 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 54.299 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 92.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 71.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 95.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 92.5 |
External links
@ref: 18936
culture collection no.: DSM 11700, ATCC BAA-1142
straininfo link
- @ref: 87455
- straininfo: 298253
literature
- topic: Genetics
- Pubmed-ID: 19689706
- title: Genome sequences of two novel phages infecting marine roseobacters.
- authors: Zhao Y, Wang K, Jiao N, Chen F
- journal: Environ Microbiol
- DOI: 10.1111/j.1462-2920.2009.01927.x
- year: 2009
- mesh: Bacteriophages/classification/*genetics/isolation & purification/ultrastructure, Base Sequence, Genome, Viral, Microscopy, Electron, Transmission, Molecular Sequence Data, Phylogeny, Roseobacter/*virology
- topic2: Phylogeny
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18936 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11700) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11700 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 87455 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID298253.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |