Strain identifier
BacDive ID: 23221
Type strain: 
Species: Actinomycetospora rishiriensis
Strain Designation: RI109-Li102
Strain history: <- T Tamura, NBRC <- M Hayakawa, Univ. Yamanashi
NCBI tax ID(s): 878212 (species)
version 8.1 (current version)
General
@ref: 19125
BacDive-ID: 23221
DSM-Number: 45862
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Actinomycetospora rishiriensis RI109-Li102 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from lichen.
NCBI tax id
- NCBI tax id: 878212
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19125 | <- NBRC; NBRC 106356 <- M. Hayakawa, Univ. Yamanashi; RI109-Li102 |
| 67771 | <- T Tamura, NBRC <- M Hayakawa, Univ. Yamanashi |
doi: 10.13145/bacdive23221.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinomycetospora
- species: Actinomycetospora rishiriensis
- full scientific name: Actinomycetospora rishiriensis Yamamura et al. 2011
@ref: 19125
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinomycetospora
species: Actinomycetospora rishiriensis
full scientific name: Actinomycetospora rishiriensis Yamamura et al. 2011
strain designation: RI109-Li102
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture medium
- @ref: 19125
- name: GPHF-MEDIUM (DSMZ Medium 553)
- growth: yes
- link: https://mediadive.dsmz.de/medium/553
- composition: Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19125 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67771
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19125 | lichen | Rishiri, Hokkaido | Japan | JPN | Asia |
| 67771 | From lichen | Rishiri, Hokkaido | Japan | JPN | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Other
- Cat3: #Lichen
taxonmaps
- @ref: 69479
- File name: preview.99_88945.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_289;97_319;98_354;99_88945&stattab=map
- Last taxonomy: Actinomycetospora
- 16S sequence: AB581530
- Sequence Identity:
- Total samples: 1238
- soil counts: 411
- aquatic counts: 92
- animal counts: 683
- plant counts: 52
Safety information
risk assessment
- @ref: 19125
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19125
- description: Actinomycetospora rishiriensis gene for 16S ribosomal RNA, partial sequence
- accession: AB581530
- length: 1468
- database: ena
- NCBI tax ID: 878212
GC content
- @ref: 19125
- GC-content: 73.1
External links
@ref: 19125
culture collection no.: DSM 45862, KCTC 19782, NBRC 106356
straininfo link
- @ref: 87448
- straininfo: 404914
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21148678 | Actinomycetospora rishiriensis sp. nov., isolated from a lichen. | Yamamura H, Ashizawa H, Nakagawa Y, Hamada M, Ishida Y, Otoguro M, Tamura T, Hayakawa M | Int J Syst Evol Microbiol | 10.1099/ijs.0.028753-0 | 2010 | Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Japan, Lichens/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/metabolism | Metabolism |
| Phylogeny | 24573328 | Actinomycetospora atypica sp. nov., a novel soil actinomycete and emended description of the genus Actinomycetospora. | Zhang Y, Liu C, Zhang J, Shen Y, Li C, He H, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0143-2 | 2014 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19125 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45862) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45862 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 87448 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID404914.1 | StrainInfo: A central database for resolving microbial strain identifiers |