Strain identifier

BacDive ID: 23220

Type strain: Yes

Species: Saccharomonospora oceani

Strain history: S.-K. Tang YIM M11168.

NCBI tax ID(s): 1155536 (species)

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General

@ref: 18913

BacDive-ID: 23220

DSM-Number: 45700

keywords: 16S sequence, Bacteria, mesophilic

description: Saccharomonospora oceani DSM 45700 is a mesophilic bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1155536
  • Matching level: species

strain history

@refhistory
18913<- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM M11168 <- J. He, YIM
67770S.-K. Tang YIM M11168.

doi: 10.13145/bacdive23220.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Saccharomonospora
  • species: Saccharomonospora oceani
  • full scientific name: Saccharomonospora oceani Zhang et al. 2014

@ref: 18913

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Saccharomonospora

species: Saccharomonospora oceani

full scientific name: Saccharomonospora oceani Zhang et al. 2014

type strain: yes

Morphology

multimedia

  • @ref: 18913
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45700.jpg
  • caption: Medium 553 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
18913marine sedimentLittle Andaman (92° 32.417'E, 10°35.550'N)IndiaINDAsia10.592592.5403
67770Marine sample in Little AndamanIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_15416.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_466;97_9508;98_11672;99_15416&stattab=map
  • Last taxonomy: Saccharomonospora oceani subclade
  • 16S sequence: KC768771
  • Sequence Identity:
  • Total samples: 1755
  • soil counts: 824
  • aquatic counts: 213
  • animal counts: 539
  • plant counts: 179

Safety information

risk assessment

  • @ref: 18913
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18913
  • description: Saccharomonospora oceani strain YIM M11168 16S ribosomal RNA gene, partial sequence
  • accession: KC768771
  • length: 1492
  • database: ena
  • NCBI tax ID: 1155536

GC content

  • @ref: 18913
  • GC-content: 71.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 18913

culture collection no.: DSM 45700, JCM 18128, YIM M11168

literature

  • topic: Phylogeny
  • Pubmed-ID: 23549906
  • title: Saccharomonospora oceani sp. nov. isolated from marine sediments in Little Andaman, India.
  • authors: Zhang DF, Chen W, He J, Zhang XM, Xiong ZJ, Sahu MK, Sivakumar K, Li WJ
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-013-9918-0
  • year: 2013
  • mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Base Sequence, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids, Genes, rRNA, Geologic Sediments/*microbiology, India, Indian Ocean, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Spores, Bacterial, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
18913Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45700)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45700
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta