Strain identifier
BacDive ID: 23217
Type strain:
Species: Pseudonocardia rhizophila
Strain history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 67013 <- J. Li, Yunnan Univ., Kunming
NCBI tax ID(s): 709987 (species)
General
@ref: 19159
BacDive-ID: 23217
DSM-Number: 45381
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudonocardia rhizophila DSM 45381 is a mesophilic bacterium that was isolated from rhizosphere soil of Tripterygium wilfordii Hook. f..
NCBI tax id
- NCBI tax id: 709987
- Matching level: species
strain history
- @ref: 19159
- history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 67013 <- J. Li, Yunnan Univ., Kunming
doi: 10.13145/bacdive23217.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia rhizophila
- full scientific name: Pseudonocardia rhizophila Li et al. 2012
@ref: 19159
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia rhizophila
full scientific name: Pseudonocardia rhizophila Li et al. 2012
type strain: yes
Culture and growth conditions
culture medium
- @ref: 19159
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 19159
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 19159
- sample type: rhizosphere soil of Tripterygium wilfordii Hook. f.
- host species: Tripterygium wilfordii
- geographic location: Yunnan province
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Shrub (Scrub) |
#Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_10042.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_2243;97_5953;98_7460;99_10042&stattab=map
- Last taxonomy: Pseudonocardia
- 16S sequence: GU322368
- Sequence Identity:
- Total samples: 454
- soil counts: 366
- aquatic counts: 13
- animal counts: 34
- plant counts: 41
Safety information
risk assessment
- @ref: 19159
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19159
- description: Pseudonocardia rhizophila strain YIM 67013 16S ribosomal RNA gene, partial sequence
- accession: GU322368
- length: 1516
- database: ena
- NCBI tax ID: 709987
GC content
- @ref: 19159
- GC-content: 69.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 19159
culture collection no.: DSM 45381, CCTCC AA 209043, YIM 67013
straininfo link
- @ref: 87445
- straininfo: 381181
literature
- topic: Phylogeny
- Pubmed-ID: 20354787
- title: Pseudonocardia rhizophila sp. nov., a novel actinomycete isolated from a rhizosphere soil.
- authors: Li J, Zhao GZ, Huang HY, Zhu WY, Lee JC, Kim CJ, Xu LH, Zhang LX, Li WJ
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-010-9431-7
- year: 2010
- mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
19159 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45381) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45381 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
87445 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID381181.1 | StrainInfo: A central database for resolving microbial strain identifiers |